MXO03973.5prime Sequence
735 bp (689 high quality bases) assembled on 2007-07-18
> MXO03973.5prime
CAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGA
GCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTG
CATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGA
TTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATT
TCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGA
GGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGA
AGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAG
TGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGA
TGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGG
AGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCC
ATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGC
CAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCGCAACGATC
TGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGCAG
CTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAGGACGTCAG
CGAAACACTGCACGAGCTATACAAGAGCTGCAAGA
MXO03973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3002-PB | 1983 | Gga-RB | 1..727 | 9..735 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gga-RB | 2360 | CG3002-RB | 111..837 | 9..735 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9602080..9602612 | 203..735 | 2665 | 100 | Plus |
| X | 23542271 | X | 9601253..9601411 | 45..203 | 795 | 100 | Plus |
| X | 23542271 | X | 9601140..9601176 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:24 has no hits.
MXO03973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:09 Download gff for
MXO03973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3002-PB | 1..726 | 9..734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:40 Download gff for
MXO03973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..836 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:56 Download gff for
MXO03973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..836 | 1..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:56 Download gff for
MXO03973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9601133..9601176 | 1..45 | 91 | -> | Plus |
| X | 9601254..9601411 | 46..203 | 100 | -> | Plus |
| X | 9602081..9602611 | 204..734 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:40 Download gff for
MXO03973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9495166..9495209 | 1..45 | 91 | -> | Plus |
| arm_X | 9495287..9495444 | 46..203 | 100 | -> | Plus |
| arm_X | 9496114..9496644 | 204..734 | 100 | | Plus |
