MXO03975.5prime Sequence
850 bp (830 high quality bases) assembled on 2007-07-18
> MXO03975.5prime
CAGTCGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCGTTGCATTT
CTGGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTCTTCACTAC
GCTGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGCGGACAGGC
CACGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTCCCATTGCC
ACCGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTATGATCAAAA
CTTTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCGCCGGAATG
GCTCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGCCACTGGAA
TGGCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACGATGAGTCT
CACGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCTTGGAGATT
CCGAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGAAGAAAGCC
TCCACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTTTACGTCAC
CCTGCTCAACGATCTNCTATTCCGNTTTCGCAAGCGGATGTCCCANCCTG
AAATGGCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGCCCATC
CTGCAGACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCCGTCAC
CCGCAATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGTGGGCG
TGGGCAAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGGCGCTG
CTCACCATTGGATTTGCTACCAAGGATATTGACGAGGTGAAAGGCATCTT
MXO03975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 1689 | CG4332-RA | 1..557 | 9..565 | 2785 | 100 | Plus |
| CG4332-PA | 1689 | CG4332-RA | 586..839 | 597..850 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 56..897 | 6..850 | 4150 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13155093..13155934 | 6..850 | 4075 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:27 has no hits.
MXO03975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:13 Download gff for
MXO03975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 1..839 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:00 Download gff for
MXO03975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 53..897 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:11 Download gff for
MXO03975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 53..897 | 1..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:11 Download gff for
MXO03975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155090..13155934 | 1..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:00 Download gff for
MXO03975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049123..13049967 | 1..850 | 99 | | Plus |
