MXO03976.5prime Sequence
866 bp (834 high quality bases) assembled on 2007-07-18
> MXO03976.5prime
CAGTCGACATGTTCGTAAACGAAGTTAACGATGTGAAGATCTACAACCTG
AGCGCCGGCAAGTCGGTGCCAGATTGGCTGACGGATCGGCGAAAGCGGTC
ACAGCTCATGAAAAAAGTGGACTCCCGGAGACAGATCGAGCTCATCCAGG
ACTTCGATATGCCCGGCGTCTGCACCAGCATCCGCATGAGTCCCGACCAA
CAGTACATCCTGGCCACCGGCACTTACAAGCCGCGCGTCAAGTGCTTCGA
GGTGTCCAACCTGTCTATCAAATTCGAGCGCTGCTTCGACGCCGAGGTGA
CCACCTTTGAGGTGATTAGCGACGACTACAGCAAGATGGTGTTCCTGCAA
TGCGATCGCTATGTGGAGATCCATGCGGCCCACGGGCGGCACTACAGACT
AAGGATACCGCGCTTTGGACGCGACATGAAGTACCACAAGCCCAGCTGCG
ACATGTTCATCGTGGGAGTGGGCAGGGACATTTTCCGACTCAATTTGGAG
CGCGGTCAGTTCCTGCAACCCTTTGAAACGGATGGCAGCTGCCTGAACGC
CTGTGAAGTGAATCCAGAAAGCACCATCTTCTGGTAGCCGGTACCAAAGA
ANGGCACCGTAGAAGCCTGGGATCCACGTACCAAGCAACGATGTTCAACT
TTGGATGTAGCCATGAAGTTGCCGGGCGTCAAGGAGTTTCCATCGGTCAC
GGCCCTCAAATTCCGGAACGGCTTGCACATGGGAGTGGGAACTGCTTCGG
GACACGTGCTGATCTACGACATTCGCGCCAAGCAACCGTTGCTGGTGAAG
AATCATCTGATTCGACTGCCCATCAAGCGTCTGGCCTTTTAATCCGGCTC
AGAATGCCGTCTATAG
MXO03976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7516-PA | 2166 | CG7516-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG7516-PA | 2166 | CG7516-RA | 592..828 | 603..839 | 1160 | 99.5 | Plus |
| CG7516-PA | 2166 | CG7516-RA | 560..591 | 570..601 | 160 | 100 | Plus |
| CG7516-PA | 2166 | CG7516-RA | 826..854 | 838..866 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2321 | CG7516-RA | 89..942 | 9..866 | 4185 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14354471..14354873 | 477..75 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 14354033..14354419 | 866..476 | 1775 | 98.7 | Minus |
| 2L | 23513712 | 2L | 14354932..14354997 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:26 has no hits.
MXO03976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:18 Download gff for
MXO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-PA | 1..854 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:21 Download gff for
MXO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 81..942 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:53 Download gff for
MXO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 81..942 | 1..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:53 Download gff for
MXO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14354033..14354418 | 477..866 | 98 | <- | Minus |
| 2L | 14354472..14354873 | 75..476 | 100 | <- | Minus |
| 2L | 14354932..14355003 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:21 Download gff for
MXO03976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14354033..14354418 | 477..866 | 98 | <- | Minus |
| arm_2L | 14354472..14354873 | 75..476 | 100 | <- | Minus |
| arm_2L | 14354932..14355003 | 1..74 | 94 | | Minus |
