MXO03978.5prime Sequence
818 bp (755 high quality bases) assembled on 2007-07-18
> MXO03978.5prime
CAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAGCCTATGTG
GACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGGTCCTACGG
AGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGTCAAGGAGT
TCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGAAGCAGTTG
TCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATATCCTCGTA
CCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGGATCGCTGC
ACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGGCCCACGCC
ATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTGCATGCCAT
GACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAACCTGCTCT
TGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCACGGTGGCG
GACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCTTGGATGGC
GCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGACATTTTTA
GCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGCCCTTTAAA
GGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAGGGTGAACG
CCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCTGATGACCG
CCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGTACATAGTG
GGCGTTATGCACGAGATC
MXO03978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18492-PA | 2037 | Tak1-RA | 1..810 | 9..818 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..1771 | 9..818 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20522502..20522822 | 696..376 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 378..76 | 1515 | 100 | Minus |
| X | 23542271 | X | 20522321..20522446 | 818..693 | 630 | 100 | Minus |
| X | 23542271 | X | 20523899..20523967 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:13 has no hits.
MXO03978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:23 Download gff for
MXO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18492-PA | 1..810 | 9..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:31 Download gff for
MXO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 955..1771 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:24 Download gff for
MXO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 955..1771 | 1..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:24 Download gff for
MXO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20522505..20522820 | 378..693 | 100 | <- | Minus |
| X | 20522321..20522445 | 694..818 | 100 | <- | Minus |
| X | 20523059..20523358 | 78..377 | 100 | <- | Minus |
| X | 20523899..20523972 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:31 Download gff for
MXO03978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20393348..20393472 | 694..818 | 100 | <- | Minus |
| arm_X | 20393532..20393847 | 378..693 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 78..377 | 100 | <- | Minus |
| arm_X | 20394926..20394999 | 1..77 | 94 | | Minus |
