MXO03981.5prime Sequence
729 bp (435 high quality bases) assembled on 2007-07-18
> MXO03981.5prime
CAATCGACATGCTTCTTCGTCCGTGTGGAAGACTAATCTTTACCAGGTTT
TGCAGCATCATGAAGGTGAAAGTGCCAGTGAAACAAGGCGTTTTGGTGGG
CCGGCAAAAAAAGCTGGTCAATGGATTGGAGTACAACAGTTTCCTGGGTG
TTCCCTACGCGGAACCACCAGTGGGAGAGCTTCTTTTCCGCATCCCGCGG
CCATTGGAGCGCTTTCAAAAGCAGGAGCTGGACTGCAGCAAGGAGGGCAA
CGTGTCTTACCAGCGAGATCCGTTTACTTTGAAGGTGGCCGGCTCCGAGG
ACTGCCTTTTCCTTAATGTATATGCACCTAAAGTCAAAAGTACGCGGACT
CCTTTACCCGTGATGGTCTGGATTCATGGTGGAGGCTTCTTCTTCGGCAA
CGGCAACAGTGACTTCCACTTTCCCGCCAAGCTCATGAAGCAGGAGGTCA
TTGTGGTCACCCTGAATTACCGACTTGGAGCGCTTGGTTTCCTTAGTCTG
CCCGAGGAGGGAATACACGGCAATATGGGGATTAAGGATCAACGTCTGGC
CCTCGAATGGGTGCAGGAGAACATAGCCAGCTTCAATGGCGATCCGAATA
ACCTAACGCTCTTCGGCGAGAGTGCGGGCGGTTCTTCAGTACATCTGCAC
ACTTTTGCCCGGCATGCCAAGCAACTATTCCACAAGGCTATCATGCAGAG
TGAAACAGCGAACATGGAATGGGTTTTCC
MXO03981.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9858-PA | 1689 | clt-RA | 1..721 | 9..729 | 3355 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1844 | CG9858-RA | 108..828 | 9..729 | 3455 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21618077..21618390 | 729..416 | 1495 | 98.4 | Minus |
| 2R | 25286936 | 2R | 21618454..21618675 | 415..194 | 1095 | 99.5 | Minus |
| 2R | 25286936 | 2R | 21618737..21618864 | 191..64 | 610 | 98.4 | Minus |
| 2R | 25286936 | 2R | 21618914..21618972 | 67..9 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:21 has no hits.
MXO03981.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:31 Download gff for
MXO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9858-PA | 1..721 | 9..729 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:35 Download gff for
MXO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 104..828 | 1..729 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:29 Download gff for
MXO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 104..828 | 1..729 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:29 Download gff for
MXO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21618077..21618390 | 416..729 | 98 | <- | Minus |
| 2R | 21618454..21618677 | 192..415 | 99 | <- | Minus |
| 2R | 21618737..21618862 | 66..191 | 98 | <- | Minus |
| 2R | 21618916..21618976 | 1..65 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:35 Download gff for
MXO03981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17506242..17506367 | 66..191 | 98 | <- | Minus |
| arm_2R | 17506421..17506481 | 1..65 | 92 | | Minus |
| arm_2R | 17505582..17505895 | 416..729 | 98 | <- | Minus |
| arm_2R | 17505959..17506182 | 192..415 | 99 | <- | Minus |
