MXO03983.5prime Sequence
736 bp (670 high quality bases) assembled on 2007-07-18
> MXO03983.5prime
CAGTCGACATGAACGATGAAGATTTCTCCCGTGGCGATGTTAGAGACTTG
TCGGATATACCCGAAGCGGATCAATTTTCCGCCTCCTTGAAATGCAGCTG
CGTGCGTCTGGTGCCCTACAGATTCGAGATTACCGAGCCGGTATGCTTCA
CCACGAAGGGCGTTCGCATTGCTGGCATCCTGAAGGACAAGGACGAGAAG
TTCGAGCTGAACATCCACAAACAGGAGGTGATCAAGGTGATAGCCCACTT
CGGCAACGTTGAGCCCGCCCAGCCACTGGTCACGCTATATCTCCTCAAGA
CGTGTGCCGAATACGTAAAGAACCAGCTCAAGCTGCCCGACGATCAGCAT
CACGAACATACCGGCTTCAAGACGCACAGCTATCACACTCGCCGTCTGAT
CCTGTTGTTCGACAGCATATCCGTGTCCGCCCGTGGTAATATCAAGTCTA
TGTTCAGTTGTGTAGACGAGATATCCTCGACAGATGCCGCCGAGATTCTC
GAGAGGATCGCGGACTCCGATCGCAAGACGCAGGACAAGAGCTCGCAGCC
ACCGCCTCGCCAACTGAGAGCAGACGAGCAGGTTAGTCTGCTGATGTATC
CGCCGAAGGGAACGGGTGGCCTGTGCATACGCATGGAGGACTTCGTCTGC
CTCACAAAGGAGTCCTACCTCAACGACATCATCATTGACTTCTATCTGCT
CTGGCTGAGGAACACGCTGATTCCGGAGCCTCAACG
MXO03983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10107-PB | 2136 | CG10107-RB | 1..728 | 9..736 | 3640 | 100 | Plus |
| CG10107-PA | 5502 | CG10107-RA | 3377..4094 | 19..736 | 3590 | 100 | Plus |
| CG10107-PC | 5502 | CG10107-RC | 3377..4094 | 19..736 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| velo-RD | 2490 | CG10107-RD | 142..869 | 9..736 | 3640 | 100 | Plus |
| velo-RB | 2691 | CG10107-RB | 343..1070 | 9..736 | 3640 | 100 | Plus |
| velo-RC | 6333 | CG10107-RC | 3995..4712 | 19..736 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6746109..6746487 | 736..358 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 6746562..6746779 | 357..140 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 6746868..6746991 | 143..20 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:32 has no hits.
MXO03983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:41 Download gff for
MXO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10107-PB | 1..728 | 9..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:42 Download gff for
MXO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| velo-RB | 187..919 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:34 Download gff for
MXO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| velo-RB | 338..1070 | 1..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:34 Download gff for
MXO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6746109..6746487 | 358..736 | 100 | <- | Minus |
| 3L | 6746562..6746778 | 141..357 | 100 | <- | Minus |
| 3L | 6746871..6747000 | 12..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:42 Download gff for
MXO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6739209..6739587 | 358..736 | 100 | <- | Minus |
| arm_3L | 6739662..6739878 | 141..357 | 100 | <- | Minus |
| arm_3L | 6739971..6740100 | 12..140 | 97 | | Minus |
