MXO03986.5prime Sequence
522 bp (378 high quality bases) assembled on 2007-07-18
> MXO03986.5prime
CAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCGTGCAAATG
AAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGCGAACCGCC
ACCGGCCTACAAGCGCCAGGCGAATTCGGTGAAAATCGCCAAGATCACCG
CCTTCACCATCATCGTGTCAGCCTTCATCCTGGGATCCTTCATCCTGGCC
TCCTCCTACCTGCAGGCCAAGGCCTCGTGCGATCAGGTCCAGGCCCTCGA
CTCGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCAGGTGGGCA
AGGAACTTCCCCGTGCTGAACCCCTGCTGGGAGGAGCTGCTGGAGCTGCC
GATGACTCCGAACTGCAGAGCTTGGAGCCGGAAAGTCGTAAGACTGAAGC
CACCCAGGATGCCGAGGAGCACCCCGACNAGGACAACTCCTACTCCGACA
GCGATGAGACCGATGAGCTGCAGAAGTTCCCCGGCAAGATGCCACTCGAG
CTGGACTTGAGTGACCTGGCTG
MXO03986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10596-PB | 1827 | Msr-110-RB | 1..514 | 9..522 | 2551 | 99.8 | Plus |
| CG10596-PA | 1854 | Msr-110-RA | 123..541 | 104..522 | 2076 | 99.7 | Plus |
| CG10596-PC | 1878 | Msr-110-RC | 147..565 | 104..522 | 2076 | 99.7 | Plus |
| CG10596-PA | 1854 | Msr-110-RA | 1..96 | 9..104 | 480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RB | 2695 | CG10596-RB | 207..720 | 9..522 | 2559 | 99.8 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 207..711 | 9..522 | 2414 | 98.1 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 207..625 | 104..522 | 2084 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5569142..5569363 | 522..301 | 1099 | 99.5 | Minus |
| 3L | 28110227 | 3L | 5573631..5573830 | 303..104 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 5576837..5576933 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:37 has no hits.
MXO03986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:46 Download gff for
MXO03986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10596-PB | 1..514 | 9..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:36 Download gff for
MXO03986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..720 | 9..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:10 Download gff for
MXO03986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..720 | 9..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:10 Download gff for
MXO03986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5569142..5569361 | 303..522 | 99 | <- | Minus |
| 3L | 5573632..5573829 | 105..302 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:36 Download gff for
MXO03986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5562242..5562461 | 303..522 | 99 | <- | Minus |
| arm_3L | 5566732..5566929 | 105..302 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 9..104 | 100 | | Minus |
