MXO03987.5prime Sequence
790 bp (741 high quality bases) assembled on 2007-07-18
> MXO03987.5prime
CAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAATATTCTTC
TGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCGCACACAGT
ATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAAGCAAAATC
CCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTCAGAGTTTA
CACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCGCACGCCGG
AAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCACAGGAGCT
CATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCAATGAATTT
AGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCTGATGATTT
TGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGAGGCTATTG
CCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACATCGATCTG
AGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGACTCGGGCTA
CGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCATATATCGG
TCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATAATTGGACC
ATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTGCCGCAATA
CGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTTGCCCAGAT
TGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGG
MXO03987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9126-PA | 1713 | Stim-RA | 1..782 | 9..790 | 3885 | 99.8 | Plus |
| CG9126-PC | 1434 | Stim-RC | 64..503 | 351..790 | 2175 | 99.7 | Plus |
| CG9126-PB | 1365 | Stim-RB | 1..434 | 357..790 | 2145 | 99.7 | Plus |
| CG9126-PC | 1434 | Stim-RC | 1..66 | 9..74 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-RD | 2141 | CG9126-RD | 193..974 | 9..790 | 3895 | 99.9 | Plus |
| Stim-RA | 2255 | CG9126-RA | 193..974 | 9..790 | 3895 | 99.9 | Plus |
| Stim-RF | 2319 | CG9126-RF | 600..1038 | 352..790 | 2180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15938756..15939100 | 353..9 | 1725 | 100 | Minus |
| X | 23542271 | X | 15936792..15937031 | 755..516 | 1155 | 98.8 | Minus |
| X | 23542271 | X | 15937591..15937754 | 515..352 | 820 | 100 | Minus |
| X | 23542271 | X | 15936393..15936436 | 790..747 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 4313..4337 | 592..568 | 107 | 92 | Minus |
MXO03987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:51 Download gff for
MXO03987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9126-PA | 1..782 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:35 Download gff for
MXO03987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..974 | 1..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:07 Download gff for
MXO03987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..974 | 1..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:07 Download gff for
MXO03987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15936799..15937031 | 516..748 | 99 | <- | Minus |
| X | 15937591..15937754 | 352..515 | 100 | <- | Minus |
| X | 15938758..15939107 | 1..351 | 98 | | Minus |
| X | 15936393..15936434 | 749..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:35 Download gff for
MXO03987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15830426..15830467 | 749..790 | 100 | <- | Minus |
| arm_X | 15830832..15831064 | 516..748 | 99 | <- | Minus |
| arm_X | 15831624..15831787 | 352..515 | 100 | <- | Minus |
| arm_X | 15832791..15833140 | 1..351 | 98 | | Minus |
