MXO03988.5prime Sequence
832 bp (733 high quality bases) assembled on 2007-07-18
> MXO03988.5prime
CAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTCCTATGGCG
CTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCCACGGCCGA
TGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGAGCCTGATC
TCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTTTGACGACG
GGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCAGTCGCAGC
AGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCATCATGGGCA
ACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCGGGCTGTAT
AAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAGCCCCACCG
CCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGATCTGGAACT
CGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAAACCTCTAC
AGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCTCTGGCTGT
GGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACTGGCCATCT
CCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGGAAACAATC
GAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGGCAGGATAT
TCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGGCCTGGCGG
TGGTTTGCGAGCGTGGCATGGAAGTGGCGGCCATCTGTGCCGCTCTGAAT
ATTTCATTGACCTCGAACAGTGACTGCGTGGA
MXO03988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13778-PC | 2292 | Mnn1-RC | 1..824 | 9..832 | 4120 | 100 | Plus |
CG13778-PB | 1593 | Mnn1-RB | 1..824 | 9..832 | 4120 | 100 | Plus |
CG13778-PA | 2292 | Mnn1-RA | 1..824 | 9..832 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RA | 4275 | CG13778-RA | 1039..1863 | 8..832 | 4125 | 100 | Plus |
Mnn1-RB | 1927 | CG13778-RB | 295..1119 | 8..832 | 4125 | 100 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..1863 | 8..832 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7057861..7058327 | 274..740 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 8..279 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 7058392..7058486 | 738..832 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:56 has no hits.
MXO03988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:56 Download gff for
MXO03988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13778-PA | 1..823 | 9..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:39 Download gff for
MXO03988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1032..1862 | 1..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:14 Download gff for
MXO03988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1032..1862 | 1..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:14 Download gff for
MXO03988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7058393..7058485 | 739..831 | 100 | | Plus |
2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
2L | 7057864..7058325 | 277..738 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:39 Download gff for
MXO03988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
arm_2L | 7057864..7058325 | 277..738 | 100 | -> | Plus |
arm_2L | 7058393..7058485 | 739..831 | 100 | | Plus |