Clone MXO03991 Report

Search the DGRC for MXO03991

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:39
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4572-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03991.5prime Sequence

844 bp (665 high quality bases) assembled on 2007-07-18

> MXO03991.5prime
CAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTATCGCGACT
ATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGCCCCTACAG
GCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGACGATGGTG
TCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACAATGCTTCG
ATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGCTCCCAGTT
CCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCCTGGCTTCA
AATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGCCGGAATAT
GCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCCTCGCTCTT
CGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCATGGGAAGC
TTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCATCTACATT
GACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGATGCCGGCTA
TGCTACGAACGAGAAGGATGTGNGGCCGCAATCTGCACGAGGCTGTGATG
CAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCTGGGTCAC
CGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTACCACATCC
ACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCTCAAGGGC
GTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGAAGTACGG
TGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTGC

MXO03991.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-PA 1449 CG4572-RA 1..564 9..572 2820 100 Plus
CG4572-PB 1449 CG4572-RB 1..564 9..572 2820 100 Plus
CG4572-PC 1449 CG4572-RC 1..564 9..572 2820 100 Plus
CG4572-PA 1449 CG4572-RA 565..835 574..844 1355 100 Plus
CG4572-PB 1449 CG4572-RB 565..835 574..844 1355 100 Plus
CG4572-PC 1449 CG4572-RC 565..835 574..844 1355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4572-RD 1744 CG4572-RD 91..925 9..844 4155 99.9 Plus
CG4572-RB 1877 CG4572-RB 224..1058 9..844 4155 99.9 Plus
CG4572-RA 1793 CG4572-RA 140..974 9..844 4155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19863336..19864170 844..9 4130 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:34:30 has no hits.

MXO03991.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:05 Download gff for MXO03991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-PC 1..835 9..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:48 Download gff for MXO03991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 130..974 1..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:06 Download gff for MXO03991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4572-RA 130..974 1..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:06 Download gff for MXO03991.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19863336..19864180 1..844 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:48 Download gff for MXO03991.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15689058..15689902 1..844 99   Minus