MXO03991.5prime Sequence
844 bp (665 high quality bases) assembled on 2007-07-18
> MXO03991.5prime
CAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTATCGCGACT
ATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGCCCCTACAG
GCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGACGATGGTG
TCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACAATGCTTCG
ATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGCTCCCAGTT
CCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCCTGGCTTCA
AATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGCCGGAATAT
GCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCCTCGCTCTT
CGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCATGGGAAGC
TTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCATCTACATT
GACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGATGCCGGCTA
TGCTACGAACGAGAAGGATGTGNGGCCGCAATCTGCACGAGGCTGTGATG
CAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCTGGGTCAC
CGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTACCACATCC
ACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCTCAAGGGC
GTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGAAGTACGG
TGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTGC
MXO03991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4572-PA | 1449 | CG4572-RA | 1..564 | 9..572 | 2820 | 100 | Plus |
CG4572-PB | 1449 | CG4572-RB | 1..564 | 9..572 | 2820 | 100 | Plus |
CG4572-PC | 1449 | CG4572-RC | 1..564 | 9..572 | 2820 | 100 | Plus |
CG4572-PA | 1449 | CG4572-RA | 565..835 | 574..844 | 1355 | 100 | Plus |
CG4572-PB | 1449 | CG4572-RB | 565..835 | 574..844 | 1355 | 100 | Plus |
CG4572-PC | 1449 | CG4572-RC | 565..835 | 574..844 | 1355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4572-RD | 1744 | CG4572-RD | 91..925 | 9..844 | 4155 | 99.9 | Plus |
CG4572-RB | 1877 | CG4572-RB | 224..1058 | 9..844 | 4155 | 99.9 | Plus |
CG4572-RA | 1793 | CG4572-RA | 140..974 | 9..844 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19863336..19864170 | 844..9 | 4130 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:30 has no hits.
MXO03991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:05 Download gff for
MXO03991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4572-PC | 1..835 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:48 Download gff for
MXO03991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4572-RA | 130..974 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:06 Download gff for
MXO03991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4572-RA | 130..974 | 1..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:06 Download gff for
MXO03991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19863336..19864180 | 1..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:48 Download gff for
MXO03991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15689058..15689902 | 1..844 | 99 | | Minus |