MXO03994.5prime Sequence
872 bp (789 high quality bases) assembled on 2007-07-18
> MXO03994.5prime
CAGTCGACATGACGAAATTCGCGCAGCGCAGCAAAAAGACGTGCGAAATA
CGCGGGACAATGGATGTGTGTGTGTGTGTGTGTGTGTCTATGTGGAAGGA
AATTTGTGAGACCTGCGACCGGGAGGCGAAGGAGAAGCAGTTCAGCACCT
CGGAATCGGAACGCCACACGAACCGCGGCCTGAATCGCTATCGGGATGTG
AATCCGTACGATCATTCCCGCATTGTTTTGAAGCGCGGCAGCGTAGACTA
CATCAATGCGAACCTGGTTCAGCTGGAGCGCGCCGAGCGCCAGTACATCC
TGACCCAAGGACCGCTGGTGGACACAGTGGGCCACTTCTGGCTGATGGTA
TGGGAGCAGAAGTCCAGAGCAGTTCTCATGCTCAACAAGCTGATGGAGAA
GAAACAGATCAAGTGCCACCTCTACTGGCCCAACGAGATGGGAGCCGACA
AGGCCCTGAAACTGCCCCACGTCAAACTCACCGTGGAGCTCGTCCGTCTC
GAGACCTACCAGAACTTTGTGCGGCGATGGTTCAAATTAACCGATCTCGA
AACGCAGCAGAGTCGTGAAGTGATGCAGTTCCACTACACCACATGGCCGG
ACTTTGGCATTCCCAGCTCGCCGAACGCATTCCTTAAGTTCTTGCAGCAG
GTTCGCGACTCCGGCTGCCTCAGCCGCGACGTGGGTCCAGCCGTAGTGCA
CTGCAGTGCCGGAATCGGGCGGTCGGGCACCTTCTGCCTGGTGGACTGTT
GCCTGGTACTTATCGACAAGTACGGAGAGTGCAATGTGTCCAAGGTGCTC
TGCGAGCTGCGCAGCTACCGCATGGGCCTCATACAGACCGCCGACCAGCT
GGACTTCTCCTACCANGCGATC
MXO03994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9181-PC | 1593 | Ptp61F-RC | 1..864 | 9..872 | 4301 | 99.8 | Plus |
| CG9181-PB | 1608 | Ptp61F-RB | 103..879 | 96..872 | 3866 | 99.8 | Plus |
| CG9181-PA | 1647 | Ptp61F-RA | 103..879 | 96..872 | 3866 | 99.8 | Plus |
| CG9181-PD | 1296 | Ptp61F-RD | 1..528 | 345..872 | 2621 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp61F-RC | 1796 | CG9181-RC | 100..963 | 9..872 | 4309 | 99.9 | Plus |
| Ptp61F-RA | 2115 | CG9181-RA | 226..1002 | 96..872 | 3874 | 99.9 | Plus |
| Ptp61F-RB | 1835 | CG9181-RB | 226..1002 | 96..872 | 3874 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1345528..1345864 | 872..536 | 1674 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1345943..1346207 | 535..271 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 1346273..1346452 | 276..97 | 885 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1424790..1424880 | 99..9 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 8238744..8238792 | 9..57 | 245 | 100 | Plus |
| 3L | 28110227 | 3L | 24138003..24138051 | 9..57 | 245 | 100 | Plus |
| 3R | 32079331 | 3R | 2151288..2151336 | 57..9 | 245 | 100 | Minus |
| 3R | 32079331 | 3R | 9283968..9284016 | 9..57 | 245 | 100 | Plus |
| 3R | 32079331 | 3R | 19744302..19744350 | 57..9 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 2914197..2914245 | 9..57 | 245 | 100 | Plus |
| 3R | 32079331 | 3R | 2845096..2845144 | 9..57 | 230 | 98 | Plus |
| 3R | 32079331 | 3R | 2749024..2749072 | 57..9 | 200 | 93.9 | Minus |
| 3L | 28110227 | 3L | 23311514..23311562 | 9..57 | 185 | 91.8 | Plus |
| 3R | 32079331 | 3R | 2726280..2726328 | 57..9 | 185 | 91.8 | Minus |
| 3R | 32079331 | 3R | 2843462..2843510 | 9..57 | 185 | 91.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1..61 | 67..7 | 296 | 98.4 | Minus |
MXO03994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:20 Download gff for
MXO03994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9181-PC | 1..864 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:12 Download gff for
MXO03994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RC | 91..963 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:44 Download gff for
MXO03994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RC | 91..963 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:44 Download gff for
MXO03994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1345528..1345864 | 536..872 | 99 | <- | Minus |
| 3L | 1345943..1346205 | 273..535 | 100 | <- | Minus |
| 3L | 1346277..1346450 | 99..272 | 100 | <- | Minus |
| 3L | 1424791..1424885 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:12 Download gff for
MXO03994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1345528..1345864 | 536..872 | 99 | <- | Minus |
| arm_3L | 1345943..1346205 | 273..535 | 100 | <- | Minus |
| arm_3L | 1346277..1346450 | 99..272 | 100 | <- | Minus |
| arm_3L | 1424791..1424885 | 1..98 | 95 | | Minus |
