MXO04001.5prime Sequence
803 bp (784 high quality bases) assembled on 2007-07-18
> MXO04001.5prime
CAGTCGACATGTCGAAAGCAGGCGAAGATCAGCCCGCAGCAGAGGGTGCG
GTGATTGCGGGCAATGGTAACGCTGAGCTGGCCCAAAATGAAGGCCAGAA
TGAGCAACAACAACCCCCGCCGAATCAGCCCACCCGCATGGAGTCCTTCT
TTGCGATGACCAAGTCCCTCATCCTGCGTGCCCTGATCATCTACTTTGTG
AGCTCCTTTTTCCGACGACCTGCGCCCGATGCCGCCAGTCAAGGCAAAAG
TGTCGCTAATGCGGGTCCCAAGATCACGGCCTGGAATTACTTCGAGAACG
GCACGGACTTTGACCTGCACGTGTGGTTGTCGGAGAATCCCGATGTGGTT
AACTTCCAGCAAAAGGCGAATCTCCTCTGGCTACAGAAGGACCTCACCTA
TGGCGATTGGACGTCGGGCGTCAACGGAGATGGCATTTACACGCACAGTT
TGAAGCTTAAGACCAGCCAGCATCTGATGAACAATGGCAGTGTGTACCTA
CATGCCTTTGTCACGCGTACCGGCATGAGTCCCGATCCCAAAGCCCCGAA
TTACGCCACCAAAATGGGCCACCAGCAACATCAGCTGAACAAGTTCAAGA
AGTTGCGTGTGAACCGCAACTACAACTTGCTGGCCAGCGAGAAGGAGAAG
TTGGAGCACGAGCTCAAGCATGCGAATCTCAAGGATACCATCGTGTCTCA
CTGGCATCCTAATCTCACGGTCAATCTCGTAGTGGACCAAACTAACTGGG
CCGAGGGATCTGTGCCGCCGCCACTGGATGACTACGTNAAGTTCGTAGAC
GGC
MXO04001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PA | 1926 | CG3702-RA | 1..795 | 9..803 | 3956 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 92..887 | 8..803 | 3969 | 99.9 | Plus |
| CG3702-RA | 2369 | CG3702-RA | 209..1004 | 8..803 | 3969 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4226015..4226768 | 803..50 | 3759 | 99.9 | Minus |
| 2L | 23513712 | 2L | 4226845..4226889 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:16 has no hits.
MXO04001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:26 Download gff for
MXO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1..795 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:06 Download gff for
MXO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..1004 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:22 Download gff for
MXO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..1004 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:22 Download gff for
MXO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4226015..4226767 | 51..803 | 99 | <- | Minus |
| 2L | 4226847..4226894 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:06 Download gff for
MXO04001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4226015..4226767 | 51..803 | 99 | <- | Minus |
| arm_2L | 4226847..4226894 | 1..50 | 94 | | Minus |
