MXO04002.5prime Sequence
837 bp (835 high quality bases) assembled on 2007-07-18
> MXO04002.5prime
CAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGATAGCTGCC
AGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGCATCAATGG
TTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGGTAAGGCGG
AGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGTTGGAAGGT
CGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTGCAGAATCC
TAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGATGGTTCTT
TTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTTGGAACTCG
AACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGGTTCCAGTA
CGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACGTTCCTTGG
AATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGAAAGTAGCC
GCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTGGACACTCT
GGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACACACCGCCA
AGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGGATCCCGCC
TCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCCAGCGATGA
TGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTTGGGCTTCG
GCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTAGATCACAG
CCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCAC
MXO04002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6296-PA | 2031 | CG6296-RA | 1..829 | 9..837 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6296-RA | 2127 | CG6296-RA | 13..841 | 9..837 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27004522..27005036 | 837..323 | 2575 | 100 | Minus |
| 3R | 32079331 | 3R | 27005087..27005364 | 325..48 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 27005418..27005457 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:07 has no hits.
MXO04002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:31 Download gff for
MXO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-PA | 1..829 | 9..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:14 Download gff for
MXO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-RA | 3..841 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:29 Download gff for
MXO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-RA | 3..841 | 1..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:29 Download gff for
MXO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27004522..27005033 | 326..837 | 100 | <- | Minus |
| 3R | 27005087..27005363 | 49..325 | 100 | <- | Minus |
| 3R | 27005418..27005462 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:14 Download gff for
MXO04002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22830244..22830755 | 326..837 | 100 | <- | Minus |
| arm_3R | 22830809..22831085 | 49..325 | 100 | <- | Minus |
| arm_3R | 22831140..22831184 | 1..48 | 91 | | Minus |
