MXO04004.5prime Sequence
572 bp (571 high quality bases) assembled on 2007-07-18
> MXO04004.5prime
CAGTCGACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGGGAATCCTG
CTCCTTGTGGGTGGTCCTGCTAACGGAGAGGTGTACACGGCCTTGGCCGA
GATGGAGGAACTTCTGGAGACTGAATCCGTACTGATTACCAACTTGGAGG
GCTACATACGCGTCCAGGAGGACAAGCTGAACTTTCTCAAGAACAAAATG
GACGAGTACCAGAGGGAGCACTCGGATGCCTCCCATGATATAACCGCCTA
TGTATCCAATCCAATCAATGCGTACCTGCTGACTAAGCGGCTAACCACCG
ATTGGCGGCAGGTGGAGAACCTCATGGAGCACGACGTGGGCACGGATTTC
TTGCAGAACATCACCCAGTATCGCAGTCTCCTGAAGTTCCCCTCCGACGA
GGACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGACACCTACC
AACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGCATTCAGTAC
AGCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGACAATCGTA
CGTGAACCACGACTACTACCAC
MXO04004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31022-PA | 1653 | PH4alphaEFB-RA | 1..564 | 9..572 | 2645 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaEFB-RA | 2248 | CG31022-RA | 336..899 | 9..572 | 2715 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30479119..30479427 | 194..502 | 1485 | 98.7 | Plus |
| 3R | 32079331 | 3R | 30474044..30474228 | 9..193 | 880 | 98.4 | Plus |
| 3R | 32079331 | 3R | 30479590..30479662 | 500..572 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:42:14 has no hits.
MXO04004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:35 Download gff for
MXO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31022-PA | 1..564 | 9..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:45 Download gff for
MXO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 329..899 | 1..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:24 Download gff for
MXO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 329..899 | 1..572 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:24 Download gff for
MXO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30474037..30474228 | 1..193 | 96 | -> | Plus |
| 3R | 30479119..30479427 | 194..502 | 98 | -> | Plus |
| 3R | 30479593..30479662 | 503..572 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:45 Download gff for
MXO04004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26299759..26299950 | 1..193 | 96 | -> | Plus |
| arm_3R | 26304841..26305149 | 194..502 | 98 | -> | Plus |
| arm_3R | 26305315..26305384 | 503..572 | 100 | | Plus |
