MXO04005.5prime Sequence
574 bp (560 high quality bases) assembled on 2007-07-18
> MXO04005.5prime
CAATCGACATGACTAACACGGATCTGAAAGCCTTGGAACTTATGTTCCAA
CGACCCCTGGAACCGGCATTCACCACTCGTGACTCCGGAAAAACTGTATT
GGAACTGCCCGATTCCTTCTATACGGATCGCTATCGCAATGACACCGAGG
AGGTGGGCAATCGATTCTCTAAGGACGTGGATCTGAAGATCCCAATTCAG
GAGTTGAGCAACGTTCCCAGTCTGGAGTTCACCAAAAAGATTGGTCTCAA
GAATCAATTTTCGCTGTTTAACAATCGCCATCGTGAGATCGCCAGCGAGC
TGATCACCCTCTTCATGAGCGCACCAAATCTCAAACAATTCGTGTCGCTT
TCCGTTTACACCAAGGATCGTGTGAATCCTGTGTTGTTCCAATACGCCTA
TGCCGTCGCCGTTGCCCATCGCCCGGATACGCGTGAAGTGCCCATTACCA
ACATTTCCCAGATCTTTCCGAGCAACTTTGTATAACCTTCCGCCTTCCGG
GATGCCCGTCAGGAAGCTTCTGTTATTGGAAAGAGCGGCGCTCGTGTCCA
TGTGGACATTCCGCAATAACTACA
MXO04005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5779-PA | 2073 | Bc-RA | 1..558 | 9..566 | 2690 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO1-RA | 2338 | CG42639-RA | 73..638 | 8..574 | 2750 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17889544..17889901 | 365..8 | 1760 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17889351..17889487 | 501..365 | 670 | 99.3 | Minus |
| 2R | 25286936 | 2R | 17889217..17889283 | 566..500 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:03 has no hits.
MXO04005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:41 Download gff for
MXO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5779-PA | 1..564 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:54 Download gff for
MXO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO-A1-RA | 68..637 | 1..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:50 Download gff for
MXO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO1-RA | 68..637 | 1..573 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:50 Download gff for
MXO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17889211..17889282 | 501..573 | 97 | <- | Minus |
| 2R | 17889352..17889487 | 365..500 | 99 | <- | Minus |
| 2R | 17889545..17889904 | 1..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:54 Download gff for
MXO04005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13776716..13776787 | 501..573 | 97 | <- | Minus |
| arm_2R | 13776857..13776992 | 365..500 | 99 | <- | Minus |
| arm_2R | 13777050..13777409 | 1..364 | 98 | | Minus |
