MXO04006.5prime Sequence
862 bp (786 high quality bases) assembled on 2007-07-18
> MXO04006.5prime
CAGTCGACATGAGGCCCACGCAGCACTCCGTCATAAACTCCTTGGGGAAA
AAGATTTCGAATCAAACTATCAACGATTCGCACTCCAACAAACATAACTT
CATGGATATGGAACAAGAGGAAAAGCAGCCTGAGCATATGTACATGGCCA
CCCAGACCGTGGAGGACATTCTTAATGAGGTCCTGTGCATGCAGAATTTC
CAGCAAAAGCAGTCGGACAGCAACCTAGATCAGTTCTGCCACTCGGAGAG
GTCCAGGGATCGGAAGCCGGGCGACGATTTGGACATGGACCCGCGACTGC
GCAGCTGGAACCGCGTGCTGCAGGAGCGTAGGCGACTGCAGGATAGGATC
GCTCGGCAGACGGGTAAGCGGGCCGAGGACGTGCTCTTCAATCGCTCGGC
GACCATCGACGAGGCCAACAAGCGGATGATTCTGCGCGTCCTTGACACCG
CAGACAGGTCACGACCTCTTGCTCGCCTCAAGGACAATGTGACCTTGAAC
TCCCTGAAGCCGCGCTGTGATCCCCATCTCTGCCGCGAGATTAAGGAGCT
GTACGCCGCGAAGCCGNCAGTTGCAGGGAGGTGGAGTTCGTCNGGCCTGC
CGCAGGTCACCCAAAAGGAGCTGGCTGCCACCCGCCTTCATTCCAACGAG
ATCGAGAGCCAGTGGCAGCGCTCCCAGGTCTTGAGCGAACGACTTGAGGA
CAAGAAGCACTCTATTCGACAGGTGCTTGACTTTGCGCCCGATCTAAATG
GGCTGCAGGTCACGCCGGCCTTTGTGGGCTCGTCCACTAAGAATCTGCCG
ATCATCAAAATCGACGAAACTTCCTTGTCTAATATCTCCGGGAACTCCAC
TCCGGAAGAGGA
MXO04006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-PA | 2121 | CG11060-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG11060-PA | 2121 | CG11060-RA | 583..851 | 594..862 | 1345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-RA | 2312 | CG11060-RA | 111..961 | 9..862 | 4195 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7175996..7176846 | 9..862 | 4120 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:20 has no hits.
MXO04006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:45 Download gff for
MXO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-PA | 1..850 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:41 Download gff for
MXO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..960 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:32 Download gff for
MXO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..960 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:32 Download gff for
MXO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7175996..7176845 | 9..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:41 Download gff for
MXO04006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3063501..3064350 | 9..861 | 99 | | Plus |
