MXO04007.5prime Sequence
893 bp (808 high quality bases) assembled on 2007-07-18
> MXO04007.5prime
CAGTCGACATGAAGTGGTTTCTCTTGTTCGTTCTGGCTATTGGCCTGGAT
TTATCTGTGGCCAACTCGATTTCTAGGTATAACCACTACCGACTGCCAAC
TGCCTTAAGACCCCAAAGGTATTACTTACGTATCCTGACACTTTTGGAAA
GTCCTGATGATCTCCGTTTCGCTGGAAATGTGCAAATCGTGATTAAAGCA
CTGCAAAATACCAGGAACATAACGCTGCACTCGAAGAACCTGACCATCGA
TGAGTCCCGGATCACGCTGCGCCAAATTAGTGGAGCGGGAAATATGGATA
ATTGTGTATCCTCCACATCCGTTAATCCCACCCACGACTATTACATCTTT
CACACCTGCAAGGAACTTTTGGCCGGCAATGTATACAAACTGTTCCTTCC
ATTCTCGGCTGATCTAACACCTCAACTTTTTGGTTACTACCGCAGTTCGT
ACAAGGATCCTGTGACCAACAAGACACGCTGGCTGTCTGCGACGCAATTC
GAACCATCCTCCGCTCGAAAGGCATTTCCCTGCTTCGATGAACCCGGTTT
TAAGGCATCCTTCGTGGTCACNTTTGGGCTATCACAAGCAGTTCAATGCA
CTGAGCAATATGCCCGTAAGGGAAATCAGGCCACACGAGTCCCTTGCAAA
CTACATATGGTGCGAGTTCCAGGAGTCGGTGCCAATGTCCACCTATCTGG
TGGCATATTCGGTTAATGATTTCTCCTTTAAACCCTCCACTCTGCCAAAT
GGAGCTCTATTCCGGACTTGGGCCAGACCCAATGCCATAGATCAGTGCGA
TTATGCCGCGGAGTTTGGACCCAAGTGCTGCAATACTATGAGGAGTTCTT
CGGCATTAGGTATCCGCTTCCCAAGATCGATCAGATGGCTGTT
MXO04007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-PA | 2784 | CG31445-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG31445-PA | 2784 | CG31445-RA | 564..815 | 573..824 | 1260 | 100 | Plus |
| CG31445-PA | 2784 | CG31445-RA | 815..885 | 823..893 | 355 | 100 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 739..815 | 733..809 | 235 | 92.2 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 739..815 | 733..809 | 235 | 92.2 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 739..815 | 733..809 | 235 | 92.2 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 656..707 | 650..701 | 210 | 96.1 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 656..707 | 650..701 | 210 | 96.1 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 656..707 | 650..701 | 210 | 96.1 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 227..281 | 220..274 | 175 | 92.7 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 227..281 | 220..274 | 175 | 92.7 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 227..281 | 220..274 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 3171 | CG31445-RB | 197..1081 | 9..893 | 4380 | 99.8 | Plus |
| CG31445-RA | 3033 | CG31445-RA | 59..943 | 9..893 | 4380 | 99.8 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 246..946 | 186..886 | 1199 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29243369..29243842 | 482..9 | 2355 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29242836..29243094 | 893..636 | 1245 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29243158..29243314 | 635..478 | 740 | 99.4 | Minus |
| 3R | 32079331 | 3R | 29247390..29247627 | 886..650 | 705 | 87.4 | Minus |
| 3R | 32079331 | 3R | 29237126..29237353 | 892..666 | 490 | 82 | Minus |
| 3R | 32079331 | 3R | 29247931..29248214 | 469..186 | 430 | 76.8 | Minus |
| 3R | 32079331 | 3R | 29239267..29239335 | 720..652 | 195 | 85.5 | Minus |
| 3R | 32079331 | 3R | 29237447..29237568 | 635..513 | 194 | 78.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:42 has no hits.
MXO04007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:50 Download gff for
MXO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-PA | 1..885 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:52 Download gff for
MXO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..943 | 4..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:12 Download gff for
MXO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..943 | 4..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:12 Download gff for
MXO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29242836..29243094 | 636..893 | 99 | <- | Minus |
| 3R | 29243158..29243313 | 479..635 | 99 | <- | Minus |
| 3R | 29243373..29243853 | 1..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:52 Download gff for
MXO04007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25068558..25068816 | 636..893 | 99 | <- | Minus |
| arm_3R | 25068880..25069035 | 479..635 | 99 | <- | Minus |
| arm_3R | 25069095..25069575 | 1..478 | 99 | | Minus |
