Clone MXO04008 Report

Search the DGRC for MXO04008

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:40
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7227-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO04008.5prime Sequence

817 bp (774 high quality bases) assembled on 2007-07-18

> MXO04008.5prime
CAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTGTGTTGGGT
CTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATGGAGCAAAT
CGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGGAACAATGA
TCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTGACCTGTAC
ATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACAGTGAAGCC
CAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGATGCAGAAGG
TCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATCGACGTCGC
AGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCTACAGATCC
CATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAAGATGGTCA
TGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGAATATCTAC
GGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATGTTCGACGG
CTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACCAAGTCTTG
TGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGTATCCACGC
AATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACGGGACGGGA
TGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAACAATGTCA
CTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCCGGAGAATTCCAT
CCAATACCGCTGGTAAA

MXO04008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7227-PA 1557 CG7227-RA 1..809 9..817 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7227-RC 2578 CG7227-RC 402..1211 8..817 4050 100 Plus
CG7227-RB 2128 CG7227-RB 402..1211 8..817 4050 100 Plus
CG7227-RA 2270 CG7227-RA 544..1353 8..817 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7996114..7996753 647..8 3200 100 Minus
2L 23513712 2L 7995884..7996053 817..648 850 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:03:33 has no hits.

MXO04008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:55 Download gff for MXO04008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-PA 1..806 9..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:25 Download gff for MXO04008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-RA 538..1350 1..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:57 Download gff for MXO04008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-RA 538..1350 1..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:57 Download gff for MXO04008.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7995887..7996053 648..814 100 <- Minus
2L 7996114..7996759 1..647 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:25 Download gff for MXO04008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7995887..7996053 648..814 100 <- Minus
arm_2L 7996114..7996759 1..647 99   Minus