MXO04008.5prime Sequence
817 bp (774 high quality bases) assembled on 2007-07-18
> MXO04008.5prime
CAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTGTGTTGGGT
CTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATGGAGCAAAT
CGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGGAACAATGA
TCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTGACCTGTAC
ATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACAGTGAAGCC
CAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGATGCAGAAGG
TCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATCGACGTCGC
AGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCTACAGATCC
CATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAAGATGGTCA
TGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGAATATCTAC
GGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATGTTCGACGG
CTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACCAAGTCTTG
TGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGTATCCACGC
AATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACGGGACGGGA
TGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAACAATGTCA
CTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCCGGAGAATTCCAT
CCAATACCGCTGGTAAA
MXO04008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7227-PA | 1557 | CG7227-RA | 1..809 | 9..817 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7227-RC | 2578 | CG7227-RC | 402..1211 | 8..817 | 4050 | 100 | Plus |
CG7227-RB | 2128 | CG7227-RB | 402..1211 | 8..817 | 4050 | 100 | Plus |
CG7227-RA | 2270 | CG7227-RA | 544..1353 | 8..817 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7996114..7996753 | 647..8 | 3200 | 100 | Minus |
2L | 23513712 | 2L | 7995884..7996053 | 817..648 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:33 has no hits.
MXO04008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:55 Download gff for
MXO04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7227-PA | 1..806 | 9..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:25 Download gff for
MXO04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7227-RA | 538..1350 | 1..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:57 Download gff for
MXO04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7227-RA | 538..1350 | 1..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:57 Download gff for
MXO04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7995887..7996053 | 648..814 | 100 | <- | Minus |
2L | 7996114..7996759 | 1..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:25 Download gff for
MXO04008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7995887..7996053 | 648..814 | 100 | <- | Minus |
arm_2L | 7996114..7996759 | 1..647 | 99 | | Minus |