MXO04009.5prime Sequence
774 bp (694 high quality bases) assembled on 2007-07-18
> MXO04009.5prime
CAGTCGACATGGCCGACAAGAAGAATCTCCTCCTGCTTTTCGACCATCCC
ACCGAGCCAGTGTTCATGGACAAGGGCAAGAGGGTGACCGTGTTCGATGT
GCCCGACTCCTTCCTGACCGACCGCTACCGACCCATCAGCAACGAGGTGC
AGAGCCGCGTCGGCGACAAGGTGGAGCAGCGCGTTCCAGTCCGGGAGATC
TCCATTCCCGATCTGCGGATCCCCATGTCCCTGGGCCGGGACGAGCAGTT
CTCGCTGTTCCTGCCCAAGCACCGCAGGATCGCCGGCCGCCTGATCGATA
TATTCATGAACATGCGCTCCGTGGACGACCTGCAGAGCGTGGCGGTGTAC
GCCAGGGATCGGGTCAACCCGGTGCTCTTCAACTACGCCTTGTCGGTGGC
GCTGCTCCATCGTCCGGACACCCAGGGCCTGGATCTGCCATCCTTCTCGC
AGACTTTCCCCGACCGCTTCATCGACTCGCAGGTGATCCGCAAGATGCGG
GAGGAGTCTTTTGTGGTGCAGCCCGGTTCCCGGATGCCCATCACCATTCC
CAGGGACTACACCGCCTCCGATCTGGATCCCGAGCACCGGCTGTGGTACT
TCCGCGAGGATCTGGGCATCAACCTTCACCACTGGCATTGGCATCTGGTC
TACCCCTTCGAGGCCTCCGACCGCAGCATAGTGGCCAAGGATCGTCGTGG
CGAGCTCTTCTACTACTTGCACCAGCAGGTGATCGCCCGCTACAATGCGG
AGCGGTTCAGCAACAACCTGACCA
MXO04009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8193-PA | 2055 | CG8193-RA | 1..762 | 9..770 | 3785 | 99.8 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 311..414 | 319..422 | 370 | 94.2 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 577..647 | 582..652 | 255 | 94.3 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 662..750 | 667..755 | 195 | 88.7 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 1..68 | 9..76 | 190 | 91.1 | Plus |
| CG5779-PA | 2073 | Bc-RA | 687..725 | 686..724 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 90..855 | 9..774 | 3800 | 99.7 | Plus |
| PPO3-RA | 2228 | CG42640-RA | 61..819 | 9..764 | 1490 | 80 | Plus |
| PPO1-RA | 2338 | CG42639-RA | 760..845 | 686..771 | 280 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9043855..9044620 | 774..9 | 3800 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23064829..23065587 | 9..764 | 1465 | 79.8 | Plus |
| 2R | 25286936 | 2R | 17889003..17889088 | 771..686 | 280 | 88.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:43 has no hits.
MXO04009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:04:59 Download gff for
MXO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-PA | 1..765 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:48 Download gff for
MXO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 82..854 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:38 Download gff for
MXO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 82..854 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:38 Download gff for
MXO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9043856..9044628 | 1..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:48 Download gff for
MXO04009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4931361..4932133 | 1..773 | 99 | | Minus |
