MXO04010.5prime Sequence
844 bp (779 high quality bases) assembled on 2007-07-18
> MXO04010.5prime
CAGTCGACATGCACCAGGCCTACAGTGTTCACTCGATCCTGAAACAGGGC
GTGCAGATAGAGTCAATTGCGGCATATGGCAACCATGTCATCTTGGGCAC
CCGCAGCGGACAGCTGATCATGTACTCTGTGGACGAGGAGACGGGCGTGG
ACATGCGGATGTTCAACAAGAACTTCAGCCGGAAACCGATCACCCAAATG
GAAGTGATTGCCTCGGAGAACCTGCTCTTCGTACTCACCGACTTACAGGT
GCAGGTGTGCGACATTCGGCGGATTGAGAGCAACTTCGCTTTCATGCACA
GTGCGCCCGACACGAAGGGATGCACCCTGTTCACCATGGACGTGGACACG
CCGAAGTCCACAACCGGACGTGTGGCCACCGTCATACGGGTGTGCTGCGC
TATCCGGCGGCGTCTTGTGTTCTTCTTTTGGAAGGAGGACAAGCTTAATT
CCCTGGAATTGATCATCGAGCTCAGCGATGTGCCCAGGACACTGTGCTGG
GTGGGCCATGCTGTCTGCGTGGGCTTCAAAGACGAATATGTTGTTTACGA
TATATCAGGAAAAGCACCAAAGAAGCACAACCTCTTCCTTACCTCCTCTA
GTATCAGCAGAGATCCCTGCATTTGCCTTATCCGGAACAACATGTTGGGC
ATCTCTAAGGACAGCTACCTCGTCGTAGTAGATCCGAGTCAGTACAAAGA
ATCGGATGGAATCAATAACTCAACAGATGTCCGGCCAGCTGCCATGGACA
GCAATAGTTCCCTAACTCCTCTGCTCTGGTCAAGTCCGCTTTTAGATCTG
GTCTGGGATGAGCCATTCGCTGTGGGTCGTGTCAACAACGCCAT
MXO04010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7146-PA | 2631 | CG7146-RA | 1..836 | 9..844 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2915 | CG7146-RA | 94..929 | 9..844 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18273759..18274232 | 551..78 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 18273448..18273697 | 801..552 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 18274283..18274353 | 79..9 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 18273347..18273390 | 844..801 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:22 has no hits.
MXO04010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:04 Download gff for
MXO04010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-PA | 1..836 | 9..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:58 Download gff for
MXO04010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..929 | 9..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:43 Download gff for
MXO04010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps39-RA | 94..929 | 9..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:43 Download gff for
MXO04010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18273448..18273697 | 552..801 | 100 | <- | Minus |
| 3R | 18273347..18273389 | 802..844 | 100 | <- | Minus |
| 3R | 18273759..18274231 | 79..551 | 100 | <- | Minus |
| 3R | 18274284..18274353 | 9..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:58 Download gff for
MXO04010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14099069..14099111 | 802..844 | 100 | <- | Minus |
| arm_3R | 14099170..14099419 | 552..801 | 100 | <- | Minus |
| arm_3R | 14099481..14099953 | 79..551 | 100 | <- | Minus |
| arm_3R | 14100006..14100075 | 9..78 | 100 | | Minus |
