MXO04011.5prime Sequence
831 bp (581 high quality bases) assembled on 2007-07-18
> MXO04011.5prime
CAGTCGACATGTGCCACCGCATCAAGCAGGACTACAGTGGCAACAGCTAC
CTGGGCCTCCACTTGGGCACCCAACTCTTCCGCGCCCTGATCCTCGACTC
CAAATTGAACGTTACCTATGTGGCGCAGATCCGCTATGACGTTGATCTCC
CAGAGTTCAAGACAACGAATGGAATACTATCAGATGGCGGTCCTGGCGAG
TTCCTGGCCAATCCGGTAATGTGGGTAAAGGCACTGGACATGCTGATGGA
CTGTTTAGTGAAACAGGGAGCGGATATGCACACGGTGGTCTCTATTGCCG
GAGCTGCTCAGCAGCACGGTTGCGTCTTCTGGTCGGAGTTGGGCTTGAGG
CGTCTATGCAATTTGAACGTTAACCTGCGGCTCCACGAGCAGATCACGGA
GAGCGCCTTCAAATTGACCAGAACGCCTACTTGGCGGGATAGCTCGACGG
ACGTGCAGGTCCGTGAAATGGAGCACACCGTCGGGGGTCCCGCTGAACTG
TCGAAAATAACGGGCTCCAGAGCGTACACCAGATTCACGGGTCCCCAAAT
ACGGAAAGTGTATACCCAGTGCCCGGAGCAGTACGAGAGAACTTCCAGGA
TTTCGCTGATCAGCAGCTTTTTGGCCTCTCTCCTTATCGGAGGCATTGCC
TCCATAGACTACAGCGATGGCTCGGGGATGAACCTGCTCGACATCCGGAA
AAAGAAGTGGTCTGCAGCGTGCCTAGACGCCTGTGCTCCTGACCTTGCCA
GGCGTTTGATGAAGCCCATTCCCTCGTCCCGGCTGCAAGGACGCATCGGG
AACTACTACGTGAAAACGCTGGAACTTCAGG
MXO04011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-PA | 1719 | CG3544-RA | 1..807 | 9..815 | 3985 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 4359 | CG3544-RB | 86..907 | 9..831 | 4060 | 99.6 | Plus |
| CG3544-RA | 1823 | CG3544-RA | 86..907 | 9..831 | 4060 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 784421..785242 | 9..831 | 4035 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:46:52 has no hits.
MXO04011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:08 Download gff for
MXO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-PA | 1..822 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:54 Download gff for
MXO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..907 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:43 Download gff for
MXO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..907 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:43 Download gff for
MXO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 784421..785242 | 9..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:54 Download gff for
MXO04011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 784421..785242 | 9..831 | 99 | | Plus |
