MXO04013.5prime Sequence
883 bp (496 high quality bases) assembled on 2007-07-18
> MXO04013.5prime
CAATCGACATGTTCGCTTTGTGGTATTTAACTTTTGCTGTCGATGAAATA
CGCAAACGTTTATCTTGGTTATTTAGTTCTAACAAGCCAGCAGCGCCTGC
GCTCGACAACAAGCCAGCGAATCCAGCTCCCGCCAAGGAATCAGCACCAG
CTCCTGCACCTGCTCCAACTCCAAAGCCCGCTGTAGTACCACCTGCTCCT
AAACCAGATCCCCCAAAACCAGCGCCAGCGGTAGCCAAACCCACTCCGGT
TCCAGTTCCTGCGACAGCTCCCGCTCCACCGAAGGAAGAACCTGCTCCAA
AGCCCAAACCGGAACCTGTGCCATCACCCGTAGTTGCCCCGCCAAAACCA
ACTCCTCCCCCAGCCAAGCCCAGCAGTCCGCCAAAACAAGCCGACAAGAT
GCCGATCCCACTGCCAAAATCCTTGACAGAGGCCAATACCAATGGCCAAA
ATGGCAATGCCGCCAATGGCGGTAATGTGGATGAACTGGTGTTCGGTGGA
CAGACAGGCCGAGAAGGTGCTTCCAGCGGCCAAGGAGGCCAGCAATGACT
TCATCAAGGGCGAGACCAATGCCTTCATCCAGTCGATTAAAGAGGCTCAA
CAGTTGGGCGAGCGCAAACAAGACACCATGGTTGATGCCGCTGTTCTCGC
TAAACTGGAGGAGGGTTATGCCAAGTTGGCTGCCTCCGACTCCAAGTCGC
TGTTGAAAAAGTACCTGACCAAGGAGGTCTTCGACAACCTGAAGAACAAG
GTCACGCGCACCTTCAAGTCGACCCTGCTGGATGTGATCCAGTCTGGCCT
GAAGAACCACGATTCCGGCGTCGGCATCTACGCTCCCGATGCCGAGGCTG
ACACAGTGTTCGCCGACCTGTTCGATCCCATCA
MXO04013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32031-PA | 1689 | Argk-RA | 1..491 | 9..499 | 2430 | 99.7 | Plus |
| CG32031-PA | 1689 | Argk-RA | 496..874 | 505..883 | 1770 | 98.6 | Plus |
| CG32031-PB | 1299 | Argk-RB | 106..484 | 505..883 | 1770 | 98.6 | Plus |
| CG32031-PC | 1191 | Argk-RC | 107..376 | 614..883 | 1250 | 98.5 | Plus |
| CG32031-PD | 1071 | Argk-RD | 1..256 | 628..883 | 1180 | 98.4 | Plus |
| CG32031-PB | 1299 | Argk-RB | 1..101 | 399..499 | 505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-RA | 2415 | CG32031-RA | 331..1204 | 9..883 | 4245 | 99.1 | Plus |
| Argk-RB | 2246 | CG32031-RB | 137..967 | 52..883 | 4030 | 99 | Plus |
| Argk-RE | 1854 | CG32031-RE | 373..643 | 613..883 | 1295 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9061907..9062468 | 614..52 | 2720 | 99.3 | Minus |
| 3L | 28110227 | 3L | 9050091..9050360 | 883..614 | 1290 | 98.5 | Minus |
| 3L | 28110227 | 3L | 9064464..9064507 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:42 has no hits.
MXO04013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:18 Download gff for
MXO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32031-PA | 1..873 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:37 Download gff for
MXO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 321..1203 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:14 Download gff for
MXO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 321..1203 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:14 Download gff for
MXO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9050092..9050359 | 615..882 | 98 | <- | Minus |
| 3L | 9061907..9062467 | 53..614 | 99 | <- | Minus |
| 3L | 9064464..9064511 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:37 Download gff for
MXO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9043192..9043459 | 615..882 | 98 | <- | Minus |
| arm_3L | 9055007..9055567 | 53..614 | 99 | <- | Minus |
| arm_3L | 9057564..9057611 | 1..52 | 92 | | Minus |
