MXO04015.5prime Sequence
848 bp (771 high quality bases) assembled on 2007-07-18
> MXO04015.5prime
CAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATGTGGAGTAC
AACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGATGTGCCCTA
CCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGACTGGACTG
CGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGACCTTTGGC
AACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCCACCTTCCA
TTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCAGCGGGGAC
GCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTCGCACGGGG
CGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCTGGAGGCGC
AACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACGCAACACGC
AGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAATCCGCGAG
AGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAGATTGATTT
TCCACGCCTTCTCAAGCTNGGCACTTCCCAATATTAAAGATGGTAAAGGA
CATTGCCACCNTGCGGATGGCTGGAATTTTATGATAAGTTATACGATCGA
GTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTTGTGCA
CACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAGGACCA
TGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGTGCTGC
ACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGCACT
MXO04015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4810-PA | 1656 | CG4810-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG4810-PA | 1656 | CG4810-RA | 601..837 | 612..848 | 1185 | 100 | Plus |
| CG4810-PA | 1656 | CG4810-RA | 561..587 | 570..596 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4810-RA | 2232 | CG4810-RA | 60..896 | 9..848 | 4125 | 99.6 | Plus |
| eIF-3p66-RB | 2012 | CG10161-RB | 820..983 | 676..839 | 235 | 76.2 | Plus |
| eIF-3p66-RB | 2012 | CG10161-RB | 225..436 | 60..262 | 225 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12194116..12194952 | 848..9 | 4050 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23680980..23681143 | 676..839 | 235 | 76.2 | Plus |
| 3R | 32079331 | 3R | 23680298..23680357 | 89..148 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:27 has no hits.
MXO04015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:23 Download gff for
MXO04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-PA | 1..837 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:42 Download gff for
MXO04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-RA | 53..896 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:59 Download gff for
MXO04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-RA | 53..896 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:59 Download gff for
MXO04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12194116..12194959 | 1..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:42 Download gff for
MXO04015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8019838..8020681 | 1..848 | 99 | | Minus |
