MXO04017.5prime Sequence
565 bp (564 high quality bases) assembled on 2007-07-18
> MXO04017.5prime
CAGTCGACATGGCTCAGTCGACGGCAACGGCGCCGCTCTACGCCGGCTAC
AAACCCCTGATCAGCTCGGTAACCACGGATACGGATCCGGATCCGGATAT
GGCCCCCTCCCTGTCAGCAGAAGGAACAGCTGATCAGCCCCAAAAATCAC
AGAGAGAAGGCGAAGTGAAAGGAGCATCATCAGAAGCCCAACGAACAAAA
GCAAACCCAAACCAGATACTTTCAGCCAGCAACAGCAGCTCAATCGACGA
GCAAGACGAGGATCAAGTAGGAACATTGCCATTGCCCCTGCTGTCCATCA
ATAGAAGGACACCCACCCTGCTCCCCCGCCCCGTTCCACCATCATCGACC
CGATTCACATCGTCCTACAACGACGACCTGTGCACGTGCAGCAACTGCGC
GTACTCCAGTTTCTCATCCTCCTCCTCCTCCGCCTCGTCCACATCCTCGT
CATCCACGAGCGCTACAGCAGCAGGAACAGCATTAGCATCAGCAGCCGCA
TCCGCCGTTGCCAAGAAGCTAGCACGCTCCGTGACCGCCACCAGCATCAT
GGACATGCCGTACAA
MXO04017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3400-PG | 2151 | Pfrx-RG | 1..557 | 9..565 | 2785 | 100 | Plus |
| CG3400-PB | 2151 | Pfrx-RB | 1..557 | 9..565 | 2785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfrx-RB | 3376 | CG3400-RB | 403..959 | 9..565 | 2785 | 100 | Plus |
| Pfrx-RG | 2928 | CG3400-RG | 403..959 | 9..565 | 2785 | 100 | Plus |
| Pfrx-RN | 3373 | CG3400-RN | 403..956 | 9..565 | 2730 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19506483..19506933 | 115..565 | 2255 | 100 | Plus |
| X | 23542271 | X | 19498775..19498880 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3220..3254 | 135..101 | 121 | 82.9 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 665..741 | 511..437 | 109 | 67.1 | Minus |
MXO04017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:32 Download gff for
MXO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3400-PB | 1..555 | 9..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:00 Download gff for
MXO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 396..957 | 1..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:49 Download gff for
MXO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 396..957 | 1..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:49 Download gff for
MXO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19498768..19498880 | 1..114 | 96 | -> | Plus |
| X | 19506483..19506931 | 115..563 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:00 Download gff for
MXO04017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19392801..19392913 | 1..114 | 96 | -> | Plus |
| arm_X | 19400516..19400964 | 115..563 | 100 | | Plus |
