MXO04018.5prime Sequence
918 bp (794 high quality bases) assembled on 2007-07-18
> MXO04018.5prime
CAGTCGACATGAAGATCGCCATCGCATTGCTGGCCTGCCTGGGCCTGGCC
GCCGCTGCCAGCTTCCACCAGACCCACGAAGTCAAGATCGCCGACAAGGC
CTTCCTGATGAAGCAGAAGTTCCTCTTCGAGATCGTCTACCGCGTGGAGG
ATCCGCTGATGTTCGAGGACCACATCAAGCAGGGCGAGAAATTCTACTTT
GAGGAGTCCTACTACACTCACTACGACATGTACATGAAGAAGTTCTTCGA
GGCCTACAAGGCTCACGCCCTGCTGCCCAAGGGCGAGTTCTTCGGCGCCC
TGGTCATGTCCCACGCCAAGCAGGCCCGCGGTCTGTTCAACTTCTTCTAC
TACGCCAAGGACTGGGAGACCTTCGCCGCCAACGTGGCCTGGGCCCGCAT
GCACGTGAATGAGGGCATGTTCGTCTACGCCCTGACCATGGCCGTGATCC
ACCGCAACGACTTCCATGGACTGATGCTGCCCTCGATCTACGAGATCTTC
CCACAGTTCTTCTTCAACAGCAAGTTTGTGTTCGAAGCGGAGAAGTTCGA
CTACGAGATGTGGATGAAGATNGACGATGTACGAGAAGGAGTACATGGGA
TGTGTACTACAAGACCAACGGATACGACTACTCAACCATGTACCGGTCCA
GCGACTACACCTACATGAAGGACTTCAAGACCTGGCAGTGGTGGAAACTG
ATGGGTCTGGGCGAGCACTGGTACACCGAGGACAAGTTCATTCTGCGCGA
GAACATCTACGAGTTCAACCAGGAGACCAAGTGGCTGTCGATGATGAAGG
ACGTGAAGAAGTTCTACATGCCCGTGGACTACACCCGCGACCTGAACCTC
TACAACAAGGAGTCCAAGCTGTCCTACTTCACCGAGGATCTGGGCTGGGA
CCGCTACTGGTACTATCT
MXO04018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4178-PA | 2370 | Lsp1beta-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG4178-PA | 2370 | Lsp1beta-RA | 588..908 | 598..918 | 1530 | 99 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 814..986 | 743..915 | 515 | 91.9 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 62..158 | 70..166 | 360 | 94.8 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 708..796 | 637..725 | 295 | 93.2 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 221..296 | 229..304 | 230 | 92.1 | Plus |
| CG6821-PA | 2319 | Lsp1gamma-RA | 306..364 | 317..375 | 220 | 94.9 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 307..362 | 315..370 | 180 | 92.8 | Plus |
| CG6821-PA | 2319 | Lsp1gamma-RA | 73..125 | 84..136 | 165 | 92.4 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 403..464 | 411..472 | 160 | 90.3 | Plus |
| CG2559-PA | 2451 | Lsp1alpha-RA | 484..522 | 492..530 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp1beta-RB | 2749 | CG4178-RB | 227..1140 | 3..918 | 4470 | 99.3 | Plus |
| Lsp1beta-RA | 2605 | CG4178-RA | 83..996 | 3..918 | 4470 | 99.3 | Plus |
| Lsp1alpha-RA | 2625 | CG2559-RA | 93..696 | 9..614 | 1449 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 899010..899707 | 219..918 | 3355 | 99.3 | Plus |
| 2L | 23513712 | 2L | 898726..898941 | 3..218 | 1065 | 99.5 | Plus |
| X | 23542271 | X | 12491157..12491435 | 637..915 | 990 | 90.3 | Plus |
| X | 23542271 | X | 12490660..12491011 | 219..570 | 980 | 85.2 | Plus |
| 3L | 28110227 | 3L | 66799..67162 | 231..595 | 725 | 80.5 | Plus |
| X | 23542271 | X | 12490383..12490540 | 9..166 | 445 | 85.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:47:13 has no hits.
MXO04018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:38 Download gff for
MXO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4178-PA | 1..908 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:04 Download gff for
MXO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 81..996 | 1..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:56 Download gff for
MXO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 81..996 | 1..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:56 Download gff for
MXO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 898724..898941 | 1..218 | 99 | -> | Plus |
| 2L | 899010..899707 | 219..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:04 Download gff for
MXO04018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 898724..898941 | 1..218 | 99 | -> | Plus |
| arm_2L | 899010..899707 | 219..918 | 99 | | Plus |
