MXO04019.5prime Sequence
907 bp (733 high quality bases) assembled on 2007-07-18
> MXO04019.5prime
CAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGATACGAGAG
TTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATCATACAGAT
CGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCATCGGGGAT
CACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATGTGACATTG
CGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGAGTCCATCG
ACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGGCTTCTACG
TTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGAACGTGACC
GATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAACAATTGGC
CTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCGGGACATAA
AGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCATCAAGCTC
TGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAGCGACGCAA
CGAGTGGTTGCCCTACANGTCCGCCAAGAAGTATTAGAAATTAAGCCGCG
AGGGCAGTTACAAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTGGCAT
TGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCTGCCT
CCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACTTATG
ATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGCTGCTCACCTCGAA
TGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCAATCGACCCA
AGAGCCTGGCCGAATGTACCAAGTTCCTAGACGACCGATGGCTGCCCAAG
ACCGCCC
MXO04019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4945-PB | 1734 | CG4945-RB | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG4945-PC | 1734 | CG4945-RC | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG4945-PA | 1656 | CG4945-RA | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG4945-PB | 1734 | CG4945-RB | 601..851 | 613..863 | 1255 | 100 | Plus |
| CG4945-PC | 1734 | CG4945-RC | 601..851 | 613..863 | 1255 | 100 | Plus |
| CG4945-PA | 1656 | CG4945-RA | 601..851 | 613..863 | 1255 | 100 | Plus |
| CG4945-PB | 1734 | CG4945-RB | 855..895 | 867..907 | 180 | 97.5 | Plus |
| CG4945-PC | 1734 | CG4945-RC | 855..895 | 867..907 | 180 | 97.5 | Plus |
| CG4945-PA | 1656 | CG4945-RA | 855..895 | 867..907 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4945-RD | 1993 | CG4945-RD | 324..1218 | 9..907 | 4335 | 99.2 | Plus |
| CG4945-RA | 2146 | CG4945-RA | 423..1317 | 9..907 | 4335 | 99.2 | Plus |
| CG4945-RC | 2622 | CG4945-RC | 572..1466 | 9..907 | 4335 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16568558..16568850 | 615..907 | 1405 | 98.6 | Plus |
| 2R | 25286936 | 2R | 16567783..16568047 | 64..328 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 16568310..16568492 | 428..613 | 780 | 98.4 | Plus |
| 2R | 25286936 | 2R | 16568107..16568208 | 326..427 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 16566936..16566992 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:10 has no hits.
MXO04019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:43 Download gff for
MXO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-PB | 1..895 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:17 Download gff for
MXO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1466 | 1..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:49 Download gff for
MXO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1466 | 1..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:49 Download gff for
MXO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16567785..16568046 | 66..327 | 100 | -> | Plus |
| 2R | 16568109..16568208 | 328..427 | 100 | -> | Plus |
| 2R | 16568310..16568492 | 428..614 | 97 | -> | Plus |
| 2R | 16568558..16568850 | 615..907 | 98 | | Plus |
| 2R | 16566928..16566992 | 1..65 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:17 Download gff for
MXO04019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12455815..12455997 | 428..614 | 97 | -> | Plus |
| arm_2R | 12454433..12454497 | 1..65 | 95 | -> | Plus |
| arm_2R | 12455290..12455551 | 66..327 | 100 | -> | Plus |
| arm_2R | 12455614..12455713 | 328..427 | 100 | -> | Plus |
| arm_2R | 12456063..12456355 | 615..907 | 98 | | Plus |
