MXO04020.5prime Sequence
900 bp (569 high quality bases) assembled on 2007-07-18
> MXO04020.5prime
CAGTCGACATGAAAATAATTTTGAGCCTGCTGCTCCTGGCTCTCTCTATC
GCTCAGTTGGACGCCTCAAGGTCAGCCACATCCGACCAGGCTCCCATTGT
CGAGTGTCCCGGACGCAGTGTTCCCCAGCTCCGTGCGGAAGCGTCAGAGT
CAGAGATCTCGCTGCTATTTTACTACGTGTCCTGGGCCAGCGAAGCACGG
CAGGCACGACTGGTCTACAATGGACTGGCCCACTATTACCAGGAGTATGG
CTTCTTTGGAGCCATCGATTGCTGGCACTTGCAGTGCAATTGCAGCCGTA
CTTTGATGCCGGCACCAGGAGTCGCCGGCGCAGGAGGTTATCCTGACAAA
TGGCCCACGCTGATCGTGCGCTACGGCCAAAAGCAGTTACTCCAGTACCA
GGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTTCATGAATAACCTGCTTC
AGCCACTGGACCGGGCACACAGTAGTCAGGATCTCGCCGCCATTCGGAAG
CACTCGGATGCGGTGGTTTTGGGTCTGCTTGACTCGCCAGACGACAAGGC
CTACAATCTTTACTTGGCTGCCNGGTCTGCGCTGGCTGGAACTGGATCCG
GAGAGGAATATCCGCTTCACCGTGTACTTTGGCAACAGTGCCAGGAAGAT
GTTGAAGTCCTCGGAGGCCAAGCTGCCCCAGTTTGTAGTTATCGACAGCC
GAAATGGAGTTCATACGTTTAATGGTACATCTGGAGTATGGAAGACCATC
GACATTCTGCGCTGGGTACGGAGCACACTCAAAAATATGTCGCTGTTCTC
CAATGGCTATGGCACTCCTATGACCATCGCCATGAAGGCACGACATGTCC
CCGTGCTGGCTATGGGAGTTCGAATGAACCATATCACCATGCTAGCGTCA
MXO04020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-PA | 2097 | CG13671-RA | 1..564 | 9..572 | 2820 | 100 | Plus |
| CG13671-PA | 2097 | CG13671-RA | 565..872 | 574..881 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-RA | 2278 | CG13671-RA | 53..944 | 9..900 | 4415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8300116..8301007 | 9..900 | 4365 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:36 has no hits.
MXO04020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:48 Download gff for
MXO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:45 Download gff for
MXO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 45..943 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:02 Download gff for
MXO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 45..943 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:02 Download gff for
MXO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8300108..8301006 | 1..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:45 Download gff for
MXO04020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8293208..8294106 | 1..899 | 99 | | Plus |
