MXO04022.5prime Sequence
846 bp (776 high quality bases) assembled on 2007-07-18
> MXO04022.5prime
CAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAGTCTCCGGT
GGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGCGCTGATGG
TGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGGTGGAGGTG
CTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTGCTGCGGAC
CTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCAGCCATTAA
TAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAAAGGACTTA
ATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCGAAACGGAA
GAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGTGTGCTCAA
TAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACATAGTGCTAC
TGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCTGTGCCAGC
AGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAACGAGTGCAG
CAAGCACGTGATCGAATTGCACGAGGGAAGCCTGCTGTTCGGCGGTGTTT
CCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCACGCTGCA
GACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATACGCGACC
TGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAAGGCGGCC
ACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCTTCACGCC
CACCCACAACGATCTCACCCGAACACTCAAGCGGTTTTCTCAATGG
MXO04022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1841-PB | 1764 | CG1841-RB | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG1841-PA | 1764 | CG1841-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG1841-PB | 1764 | CG1841-RB | 567..828 | 576..837 | 1260 | 99.2 | Plus |
| CG1841-PA | 1764 | CG1841-RA | 567..828 | 576..837 | 1260 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 367..1199 | 9..843 | 4095 | 99.5 | Plus |
| Tango10-RA | 3008 | CG1841-RA | 179..1011 | 9..843 | 4095 | 99.5 | Plus |
| Tango10-RB | 3247 | CG1841-RB | 418..1250 | 9..843 | 4095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721198..11721660 | 374..837 | 2240 | 99.4 | Plus |
| X | 23542271 | X | 11720662..11721027 | 9..374 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:30 has no hits.
MXO04022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:05:57 Download gff for
MXO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1841-PA | 1..837 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:29 Download gff for
MXO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1254 | 5..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:52 Download gff for
MXO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1254 | 5..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:52 Download gff for
MXO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11720660..11721027 | 5..374 | 99 | -> | Plus |
| X | 11721199..11721669 | 375..846 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:29 Download gff for
MXO04022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11614693..11615060 | 5..374 | 99 | -> | Plus |
| arm_X | 11615232..11615702 | 375..846 | 98 | | Plus |
