MXO04023.5prime Sequence
896 bp (670 high quality bases) assembled on 2007-07-18
> MXO04023.5prime
CAGTCGACATGTTGGGCCTTCAGTCATACGCCAGTTCCTCGGATGAAGAA
TCGGACCATGCGGACGCCGCCACAGCCACCACGAATTCGGAGCCCTCCGC
TCCCATTCCGGATCACCTGCTGCCCGTGGACAAGACACACTCGCTATCCA
AGTCCGTTGCTGTTTGTGCGGCGCCAACGGTGGTTCCCCTTGGAGCATCG
GCCGTGCCCCGAACTCTGGATCCCACGCTCAAGGAGGTAACCTACAATCC
GCGCTATGAGGAGATGTATGCTCCGGTAAAAGGTCCGGAGCATCCGGACC
TCACCATGCAGCAGCGCGCTCCGCGGAACACCCTAACCGGCTACGTAGAG
AAGGCCCACATCAATGCCTTCGAATTTGAGAACCAGCGACGCACCTTTCA
CACCTACGGCTACGCATTGGACCCCAGCGTAGACGATCAGGCGGACGGCC
AGTCTTTTGTGGGTGACCTGCAGTCTGCGTACGATGACAATGGCAAGACG
GAATTTGAGCCGCCCAAGGCAAAGAAACTGCGCAAGCAGGAGAAAAATGA
TAATCCCGAGGACATTGAGGGCTTTCTGGGTCCCTGGGGCAAGTTCGAAA
ACGAGGTGTCGGTGGCAAAGCCAAATGAACAGGAGCGCGCCGAACTGGAC
GAGCTGCTGTCTAAGCGACATAAGCGCGGACGCATTCCCGAGGATAAGCC
GCTCGAGGAGAAGTCGACGCTGCACATCAGGGATGCGTACGACTATCAAG
GCCGCTCTTATTTGCATGCTCCTCATGATCTGGGCGTGAATCTACGATCG
AATGCACCACCGACCAAATGCTTTCTGCCCACAGCGCACATACACACCCT
GGTCGGGCCACAACAGGGGCATCTTCCTCAATCCGGTGGGTCCCCA
MXO04023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6015-PA | 1731 | CG6015-RA | 1..840 | 9..848 | 4000 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45099-RA | 2012 | CG45099-RA | 206..1091 | 9..896 | 4210 | 98.4 | Plus |
| CG6015-RA | 2012 | CG6015-RA | 206..1091 | 9..896 | 4210 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22033364..22034081 | 726..9 | 3530 | 99.4 | Minus |
| 3R | 32079331 | 3R | 22033131..22033298 | 896..727 | 630 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:33 has no hits.
MXO04023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:03 Download gff for
MXO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-PA | 1..885 | 9..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:04 Download gff for
MXO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 196..1090 | 1..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:15 Download gff for
MXO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 196..1090 | 1..895 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:15 Download gff for
MXO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22033132..22033298 | 727..895 | 94 | <- | Minus |
| 3R | 22033364..22034087 | 1..726 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:04 Download gff for
MXO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17858854..17859020 | 727..895 | 94 | <- | Minus |
| arm_3R | 17859086..17859809 | 1..726 | 98 | | Minus |
