MXO04024.5prime Sequence
836 bp (792 high quality bases) assembled on 2007-07-18
> MXO04024.5prime
CAGTCGACATGACGAGCGGTACGGTAGCAACGGCGGTGGAGGTGCAGCTG
CCGCTCAAGGTCGTTCGCCGTAAAATCGAGCGCGTTGGCTTCGCTTACTT
TGCGCAACGGCGCCAATTTCTAGCTCCCGGCGGCGTGGAGCGCAGCGAAA
GCGATGAGAAATTGGAGGGCGTGGGCGAGGAGGTGGACATCAGCTACCTA
AAGTCGCTGGATCCTAAGGAGTGGAAGGACCAGGATCATTACGCCGTTCT
TGGCTTGGGCAAGCTCCGATACGAGGCCAGCGAGGATGATGTTCGACGGG
CTTACAGGCGCATGGTTCTGCTGCACCATCCCGATAAGCGGAAAGCCAAG
GGCGAGGAAGTCATCCAGGACGATGATTACTTCACATGCATAACCAAAGC
TTACGAGATACTGGGCACATCCAAGCCGCGCCGCAGCTTTGACTCAGTGG
ATCCCGAGTTTGACGACTCGCTGCCCTCACAGAACGACATCGATAACGAC
TACTTTGGCGTATTTAACAAATTTTTCACACTTAACGGGCGCTGGAGCGA
AAAGCCGCATGTTCCCTCCTTCGGGCAGGTGGACGCCAAACGCGAAGAGG
TGGAGCGCTTCTACAACTTCTGGTACGATTTTAAGTCATGGCGGGAATTC
AGCTACTTGGACGAAGAGGACAAGGAGAAGGGCCAGGACCGCGACGAACG
TCGCTGGATCGAAAAGGAGAACAGGGCGGCTCGAATCAAGCGCAAGAAGG
AGGAAATGTCTCGTATCCGGTCGCTCGTCGATTTAGCCTACAACAATGAT
AAGCGCATTCAGCGCTTCAAGCAGGAGGAAAAGGAT
MXO04024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10565-PA | 1941 | CG10565-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10565-RB | 2538 | CG10565-RB | 477..1304 | 9..836 | 4140 | 100 | Plus |
| CG10565-RA | 2237 | CG10565-RA | 176..1003 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21134484..21134906 | 836..414 | 2115 | 100 | Minus |
| 3L | 28110227 | 3L | 21135618..21135877 | 268..9 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 21135363..21135510 | 415..268 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:23 has no hits.
MXO04024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:07 Download gff for
MXO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-PA | 1..828 | 9..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:10 Download gff for
MXO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 171..1003 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:02 Download gff for
MXO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 171..1003 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:02 Download gff for
MXO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21134484..21134905 | 415..836 | 100 | <- | Minus |
| 3L | 21135364..21135509 | 269..414 | 100 | <- | Minus |
| 3L | 21135618..21135882 | 1..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:10 Download gff for
MXO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21127584..21128005 | 415..836 | 100 | <- | Minus |
| arm_3L | 21128464..21128609 | 269..414 | 100 | <- | Minus |
| arm_3L | 21128718..21128982 | 1..268 | 98 | | Minus |
