MXO04027.5prime Sequence
790 bp (719 high quality bases) assembled on 2007-07-18
> MXO04027.5prime
CAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGAACCACGAA
AACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTCCGCACGGC
CACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCGCCGCAAGA
TTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAGAAAAGACT
GCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGCAAGCCGGC
TGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAATGTGACGG
CACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCATTCTCGTTC
GGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGCACTAGCAT
TTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTTGCCGGCCA
AGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCTCGATATTT
GGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAAACCAGCAG
CAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTACCGTGAAA
GCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACCAAATG
GGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAACTATGATGA
GCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAACTCCACGA
AATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGC
MXO04027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2158-PA | 1695 | CG2158-RA | 1..782 | 9..790 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 103..884 | 9..790 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8123419..8123975 | 234..790 | 2785 | 100 | Plus |
| 2R | 25286936 | 2R | 8123138..8123365 | 9..236 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 502..577 | 110 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2375 | 509..577 | 108 | 63.8 | Plus |
MXO04027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:17 Download gff for
MXO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 1..782 | 9..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:18 Download gff for
MXO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..884 | 9..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:37 Download gff for
MXO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..884 | 9..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:37 Download gff for
MXO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8123138..8123363 | 9..234 | 100 | -> | Plus |
| 2R | 8123420..8123975 | 235..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:18 Download gff for
MXO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4010643..4010868 | 9..234 | 100 | -> | Plus |
| arm_2R | 4010925..4011480 | 235..790 | 100 | | Plus |
