MXO04028.5prime Sequence
812 bp (765 high quality bases) assembled on 2007-07-18
> MXO04028.5prime
CAGTCGACATGCTGCTGGCCGCAGCCGGTCCACCGGCTTACGACGCCGGA
AAACTGTCCAACAATGCCGGATCCGGATCCAGCAACGTGGGCTCCGGCGG
AGTGGGTACGCCCACGGCGTCCTCGTCGCGTCCTAGTGCCGCTAGTGCCC
TGATGAAGACCCTGTCTGTGCGCCTGCATCGAGGCACCGAGTTCATTAAG
GACACCGTTCATAAGGCCCTGGTCATGTCCGCTCCAACGCCTGTGGCCCC
AGCTACAGCTCCTGCGCCCAAGATCGTGGACCACAGCCTAAAGCGAAAAC
TAAGCGGCGCTGGCGGGCTGATGGGCTGCAGCAGCATTGGCAGCATGACC
TCATCTATCGCCGGCAGCTCGAGAAGTCACCACTATGCACTGACTAGCCA
GGTGGCCTCGTCACAGGTGATTCCTTTGCCCAGTCAAGTGCCAACAGCCG
CCTTTCTGCGCACCTACACTGTGGCTCCCACGGCACTCCATCGATCTGCC
GCCGCTCGCAAACGGAATCCCAGCACCGACAGCCTGCTTATGGACCTGTG
CCTCTTTAAGCCCATTCGGCCCATGCCCATAACGCCAATAAAAATCCACA
AGTTCCGCGGATTTGAAGTGAAGAAACCAAAATTTGTCCCCGCTGGAAAT
CCAGACAGCGAAGATGATGAGGACAACGACGAAGATGGGACGGTCCGCAA
GCCAAAGCCCAGCAACTTGACATTGCCAACAATTTCGGACTCGGCCTTCG
TTCCGATGCCCTATATAGAAACCACCAACACCGCCATTAACGCAACCACC
ACCACTAACAGC
MXO04028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14657-PB | 1335 | CG14657-RB | 1..804 | 9..812 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14657-RC | 2975 | CG14657-RC | 514..1317 | 9..812 | 4020 | 100 | Plus |
| CG14657-RB | 2414 | CG14657-RB | 514..1317 | 9..812 | 4020 | 100 | Plus |
| CG14657-RD | 2888 | CG14657-RD | 514..1101 | 9..596 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4820333..4820919 | 595..9 | 2935 | 100 | Minus |
| 3R | 32079331 | 3R | 4819794..4819910 | 712..596 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 4819638..4819739 | 812..711 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:28 has no hits.
MXO04028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:22 Download gff for
MXO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14657-PB | 1..804 | 9..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:20 Download gff for
MXO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14657-RB | 509..1317 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:39 Download gff for
MXO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14657-RB | 509..1317 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:39 Download gff for
MXO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4819794..4819910 | 596..712 | 100 | <- | Minus |
| 3R | 4819638..4819737 | 713..812 | 100 | <- | Minus |
| 3R | 4820333..4820923 | 1..595 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:20 Download gff for
MXO04028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 645360..645459 | 713..812 | 100 | <- | Minus |
| arm_3R | 645516..645632 | 596..712 | 100 | <- | Minus |
| arm_3R | 646055..646645 | 1..595 | 99 | | Minus |
