MXO04029.5prime Sequence
890 bp (809 high quality bases) assembled on 2007-07-18
> MXO04029.5prime
CAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGCGGATCTTC
ATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGTGACCAGCA
CATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCCCAAGGACT
GGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGCTCAGCCGA
ACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGCCTTCTGCA
CTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGATTTGAGGT
ACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGGCGGTGGTT
AATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTGTCCCTGTG
CAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCAGGTGCCGC
ATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTTACCTGCAG
CCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCGTTTCATGG
AGAAGGCGGAAGCACGGGGCAGTCTGGGACAAGCCCTCTGCANCCGGGAT
CCTTCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCTCGCCA
GTGCGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAGCTTGG
CTATGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCAGGAGA
ATTTGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTCTTCAG
CTGCGCCCCAAGTCGCTGGTGGAGAAGGCTCGTCTGAATGTGGGCTGGCT
AGATCCCTCGCTGTCCATCATGAAACAGGGCATACGCGAG
MXO04029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7729-PA | 2148 | Fit2-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG7729-PA | 2148 | Fit2-RA | 583..879 | 594..890 | 1435 | 99.3 | Plus |
| CG14991-PA | 2127 | Fit1-RA | 236..276 | 244..284 | 155 | 95.1 | Plus |
| CG14991-PB | 2127 | Fit1-RB | 236..276 | 244..284 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..1209 | 8..890 | 4310 | 99.4 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1135 | 9..534 | 620 | 75.4 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..1219 | 9..534 | 620 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17025536 | 8..890 | 4235 | 99.4 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 9..451 | 610 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:55 has no hits.
MXO04029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:27 Download gff for
MXO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7729-PA | 1..879 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:57 Download gff for
MXO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1209 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:20 Download gff for
MXO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1209 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:20 Download gff for
MXO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024651..17025536 | 1..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:57 Download gff for
MXO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017751..17018636 | 1..890 | 99 | | Plus |
