MXO04030.5prime Sequence
919 bp (874 high quality bases) assembled on 2007-07-18
> MXO04030.5prime
CAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTACGCCTACA
GCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGCGACGAGGA
TCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGAGGACTTGA
ACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGCATGAGCGT
AGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCGGATAAGAA
GCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAAAGATCGGG
AGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAAATGGCGAG
CACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAGAGCAGCAA
ATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGAAAAGGACA
AAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGAGCAAACAC
AAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCCCCACGCCA
CGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATCGAAATCTC
GAGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAAATTTTGA
CGATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAGAGCAGCA
GCAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCCTTCCTCG
TCAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGGCACTCTC
AACTAGCAGTCGACCGACCTCCAAAAAACCCGAACTGTTGGCATCCACAG
CTAAGCTGGAGCCCTTGGATCCAAACATTGCACTAGAACTTCCCACCATA
TCCAATAACTACAAGCCCA
MXO04030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6755-PA | 1932 | EloA-RA | 232..822 | 9..599 | 2955 | 100 | Plus |
| CG6755-PB | 1701 | EloA-RB | 1..591 | 9..599 | 2955 | 100 | Plus |
| CG6755-PA | 1932 | EloA-RA | 823..1141 | 601..919 | 1595 | 100 | Plus |
| CG6755-PB | 1701 | EloA-RB | 592..910 | 601..919 | 1595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-RB | 2697 | CG6755-RB | 374..1283 | 9..919 | 4530 | 99.9 | Plus |
| EloA-RA | 2869 | CG6755-RA | 546..1455 | 9..919 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23252399..23252837 | 9..447 | 2195 | 100 | Plus |
| 3R | 32079331 | 3R | 23252890..23253269 | 445..825 | 1855 | 99.7 | Plus |
| 3R | 32079331 | 3R | 23253325..23253418 | 826..919 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2544 | 670..830 | 169 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6850 | 666..809 | 161 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2448 | 678..773 | 160 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6970 | 670..827 | 158 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2429 | 661..805 | 145 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6866 | 670..810 | 141 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2911 | 678..795 | 139 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6904 | 670..805 | 137 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6878 | 670..767 | 136 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2712 | 680..814 | 130 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6798 | 670..715 | 122 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6825..6948 | 670..789 | 116 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2611..2657 | 670..716 | 109 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6897 | 678..715 | 109 | 76.3 | Plus |
MXO04030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:32 Download gff for
MXO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6755-PB | 1..909 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:04 Download gff for
MXO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 540..1454 | 1..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:29 Download gff for
MXO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 540..1454 | 1..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:29 Download gff for
MXO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23252393..23252836 | 1..446 | 99 | -> | Plus |
| 3R | 23252892..23253269 | 447..825 | 99 | -> | Plus |
| 3R | 23253325..23253417 | 826..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:04 Download gff for
MXO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19078115..19078558 | 1..446 | 99 | -> | Plus |
| arm_3R | 19078614..19078991 | 447..825 | 99 | -> | Plus |
| arm_3R | 19079047..19079139 | 826..918 | 100 | | Plus |
