MXO04031.5prime Sequence
867 bp (565 high quality bases) assembled on 2007-07-18
> MXO04031.5prime
CAGTCGACATGAGTGGATATCGAGGCATTGGCGGTGGGGGCTTCCCCTAC
CGCAAGCCAGCAAGTTCCGGCAACAACATGAACGCCGTACCGCCGCCCCC
GATGCTGAATGCCCGTGGCTATTCTGGTTCCCGCGGAGGATTTGGAGGAG
CAAGCCGTGGCGGTGTCACCGGGAGCACTACATCAACGTCCAAGCACGGC
TACTCCACCTTGGACTCCATCAGCCAGTACACCAATGCCACCAATCTGGT
TGGCAAAAGGAAGCACCACACGGACGATGACTATTTCGATGATGACGATG
AGCCCCGGGAAAAGGAGATAGAACAAGCCTATATACCGGCACCAGGATCC
CCGGGAGCTCCGCCAACGTCGGCCAAAAAGCAAGAGGATTCCGATTCGGA
TGAGGATCCCCTCGAGCAGTTCATGGCGGGCATCAACCAGCAGGTGGAGA
AGGAGAAGCGTCAACAAGCACCTAAGCCGCCAACTCAGGCGGTGAGAGGT
GACATCGATGACGAGGACGATGAGGAGAGCTACTATCGCTACATGAAGGA
GAATCCCAATGCTGGACTCTCGCGACGAGGGGATCCGATCAGGAAATCGA
ATACGATGAGGATGGCAATCCCATAGCCCCACCGAAGAAAAAGGACATTG
ATCCTCTGCCGCCCATCTACCATTCCGAAATCGAGTACGAACCCTTCGAG
AAGAACTTCTACACGCAGCATGACGACATAGCCGCCCTGGATGATGAGCA
AGTCCGGGAATTAAGGCGCACACTTGGCGTAAAGGTCACTGGTCCATCAC
CACCCNAACCAGTCACGTCCTTCGGCCATTTCGGCTTTGATGAGCAACTC
ATCAAGGCCGTGAGGAA
MXO04031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-PB | 2376 | CG6418-RB | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG6418-PB | 2376 | CG6418-RB | 570..857 | 580..867 | 1421 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-RB | 2723 | CG6418-RB | 93..949 | 9..867 | 4234 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10878089..10878945 | 867..9 | 4184 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:36 has no hits.
MXO04031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:38 Download gff for
MXO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-PB | 1..855 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:37 Download gff for
MXO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 86..949 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:09 Download gff for
MXO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 86..949 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:09 Download gff for
MXO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10878089..10878949 | 1..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:37 Download gff for
MXO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10871189..10872049 | 1..867 | 99 | | Minus |
