MXO04032.5prime Sequence
825 bp (600 high quality bases) assembled on 2007-07-18
> MXO04032.5prime
CAGTCGACATGGTGCGGCCCAACAACAACCAGCTGCCGGAGAACCTTCCG
CAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAGCGATGAGTT
CCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTTTTGCGCTGA
ATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATGTTTGTCGCC
CAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCCAAAGCGTCT
TTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGGCTATGCGTA
ACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAACCTAGTGCCC
GCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTGTCCGGACAA
GAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACATCAAGAATA
TGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTGCAGGCATTC
ATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAAGATGTCCGC
TGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATGATTCTAAGA
CGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTAACAAAAGTA
CTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGAGGATGAAGA
GGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTGCTCTGATGG
CCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAACTGGCGCAG
ATCAAAAAGCAAGCGGTGAAGGCCC
MXO04032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8070-PA | 2139 | Mys45A-RA | 1..817 | 9..825 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..897 | 8..825 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9113395..9113872 | 485..8 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9112993..9113333 | 825..485 | 1705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:47 has no hits.
MXO04032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:43 Download gff for
MXO04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1..817 | 9..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:39 Download gff for
MXO04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 72..897 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:15 Download gff for
MXO04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 72..897 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:15 Download gff for
MXO04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9112993..9113332 | 486..825 | 100 | <- | Minus |
| 2R | 9113395..9113875 | 1..485 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:39 Download gff for
MXO04032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5000498..5000837 | 486..825 | 100 | <- | Minus |
| arm_2R | 5000900..5001380 | 1..485 | 99 | | Minus |
