MXO04034.5prime Sequence
827 bp (680 high quality bases) assembled on 2007-07-18
> MXO04034.5prime
CAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGGCGGTCGTG
TCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCATGAATGGCT
TACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTGGCAGCTAA
TGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCATCACGCTG
CACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAGAATCGCGA
GGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGCTGGCGGAC
CGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTTACATCGTT
CACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATCAACACGTT
TCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATTGTGGATCA
TGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCATACATACG
TCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGAGTGCAGTT
GGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAACCGCGTGT
GGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGTGCGTCGGC
ACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTCACCATCAC
CGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTGCATACACG
CCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCGAGTCCTGT
CTGAAGACCATGGTGAACATTATCTCC
MXO04034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7212-PA | 2916 | cdm-RA | 1..816 | 9..824 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdm-RB | 3691 | CG7212-RB | 132..949 | 7..824 | 4090 | 100 | Plus |
| cdm-RA | 3253 | CG7212-RA | 132..949 | 7..824 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18182596..18183094 | 661..163 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 18182371..18182533 | 824..662 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 18183191..18183348 | 164..7 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:47 has no hits.
MXO04034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:48 Download gff for
MXO04034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7212-PA | 1..820 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:35 Download gff for
MXO04034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..953 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:03 Download gff for
MXO04034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..953 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:03 Download gff for
MXO04034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18182367..18182533 | 662..827 | 99 | <- | Minus |
| 3R | 18182596..18183092 | 165..661 | 100 | <- | Minus |
| 3R | 18183191..18183354 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:35 Download gff for
MXO04034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14008089..14008255 | 662..827 | 99 | <- | Minus |
| arm_3R | 14008318..14008814 | 165..661 | 100 | <- | Minus |
| arm_3R | 14008913..14009076 | 1..164 | 98 | | Minus |
