Clone MXO04036 Report

Search the DGRC for MXO04036

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:40
Well:36
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11851-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO04036.5prime Sequence

254 bp (199 high quality bases) assembled on 2007-07-18

> MXO04036.5prime
TATGCAGTCGACATGGNCCNGCCTCCGGCTGCCTCGCGCTCGCTACATAG
CCAACAAGGCGGACAACCAGATTCTCTCAAAGAAACCGCCCAAAAGACCG
GGCCTAAATGGCAACAACAAGACGAAGGAAGCCACACCGGCCGGCAAAAA
AAAGGATAAGGATGCTAAAAAGCGCAACCAACCCACAAGTGGTGGTCAAG
AGAAGGGGCTTCCCAACCCCATAATGCCCAGTGTTCAGACCGCCTTCAAG
ACCT

MXO04036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11851-PA 1872 CG11851-RA 17..238 33..254 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11851-RA 2363 CG11851-RA 119..351 21..254 1145 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25221707..25221859 21..174 720 99.4 Plus
3R 32079331 3R 25221917..25221997 174..254 405 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:03:36 has no hits.

MXO04036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:06:59 Download gff for MXO04036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11851-PA 1..238 13..254 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:28 Download gff for MXO04036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 114..351 13..254 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:58 Download gff for MXO04036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 114..351 13..254 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:58 Download gff for MXO04036.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25221702..25221859 13..174 97 -> Plus
3R 25221918..25221997 175..254 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:28 Download gff for MXO04036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21047424..21047581 13..174 97 -> Plus
arm_3R 21047640..21047719 175..254 100   Plus