MXO04037.5prime Sequence
849 bp (725 high quality bases) assembled on 2007-07-18
> MXO04037.5prime
CAGTCGACATGGAGGGCTATGGGAGCAGCAATGCCACCACTCCGCTGGCC
ACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCCCTGAAGAA
GGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCGTTCCCACG
CCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGATCGTGCAG
CGCGAAGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCGGACAACTA
TGTGCTCAGTTGCCGGAGCAAAGCGGCTGTACTGCACTTCGTACTTAATA
AGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGTACCAGTTT
GAGGAGGATGCCTTCGATACGGTGCCCGACCTAATTACCTTCTACGTGGG
ATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCAGTTTCCCT
GCAATCGCACCTATCCGCTCTCCTTCTACGGCCACAAGATCGTGGGCAAC
CAACTGCACACGCAGATGCTGGCCGGTCTGCGAGGTCTGAGTCCTCTGAA
CTCGCCGATGGGCAGCAATGGTGCAGTGGGAGCAGGTATGAACGCTACCT
TTCGCTTCGAACCGCAGCAGCAGCAGCAGCAACAGCTCTCGCCGATGGCT
GGCTCACCGGCCAGTCCGCACTGCTCGCCGCCGCGGGCGCGTAGAGAGGT
GCCTCCACCGCCGCGGCTGCCGTGCAAGAAGCAACAGCGCTCCCAGAGCC
TCACACCGGCCCAGGCCATGTTGGTCAGCAACCATCAACAAGCTTCAGGA
GCAACAACTACAGATGCCGGAGCTCGAGAATGGCAATGGCAACGGAATA
MXO04037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PA | 2835 | CG9098-RA | 574..1347 | 9..782 | 3870 | 100 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 1..774 | 9..782 | 3870 | 100 | Plus |
| CG9098-PA | 2835 | CG9098-RA | 1347..1413 | 783..849 | 310 | 98.5 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 774..840 | 783..849 | 310 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..1504 | 9..849 | 4165 | 99.8 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..1173 | 9..849 | 4165 | 99.8 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..1515 | 9..849 | 4165 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009695..6010242 | 849..301 | 2680 | 99.6 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 306..9 | 1475 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 118..149 | 124 | 87.5 | Plus |
MXO04037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:03 Download gff for
MXO04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1..839 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:06 Download gff for
MXO04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1514 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:16 Download gff for
MXO04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1514 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:16 Download gff for
MXO04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6009696..6010240 | 303..848 | 99 | <- | Minus |
| 2L | 6010313..6010610 | 1..302 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:06 Download gff for
MXO04037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6009696..6010240 | 303..848 | 99 | <- | Minus |
| arm_2L | 6010313..6010610 | 1..302 | 98 | | Minus |
