MXO04038.5prime Sequence
920 bp (593 high quality bases) assembled on 2007-07-18
> MXO04038.5prime
CAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAGTGACGGTA
GCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGTTCCCGTTT
GCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGGACTGACCT
GCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCCAGTTCATT
GCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAAAGCTTAAT
TACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCATGCCACTC
TGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTCTGAATGCC
CTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAGCTGTTCCA
CGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACAGCCCCTCG
GCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACAGCAGCTTG
GCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGCTCCATGGC
AGCGGGACTGGGAGCCAGCCAAGAGGATCGGGGATCAACCGAACCNGGCC
CTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATGAGAGCA
CCAGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGATTCGCCT
GCCTCTGTTTGCGAACGCGACGGANACGATCGCCTGGGATCCGTGCTTCT
GGATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCAGCAATC
CGGATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCGCGACCG
CGACTTCCACAATCCCAACAGCAGCAGGATGAGGGTCTGAATCGCCGGGT
GTCCAGCTCCTGTCGATCGC
MXO04038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-PA | 1677 | CG3016-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG3016-PA | 1677 | CG3016-RA | 587..910 | 597..920 | 1601 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 160..1070 | 8..920 | 4504 | 99.7 | Plus |
| CG3016-RA | 2436 | CG3016-RA | 329..1239 | 8..920 | 4504 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878495..5879323 | 920..90 | 4044 | 99.6 | Minus |
| X | 23542271 | X | 5879375..5879459 | 92..8 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:23 has no hits.
MXO04038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:08 Download gff for
MXO04038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-PA | 1..910 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:09 Download gff for
MXO04038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 324..1239 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:25 Download gff for
MXO04038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 324..1239 | 1..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:25 Download gff for
MXO04038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5878495..5879322 | 91..920 | 99 | <- | Minus |
| X | 5879377..5879462 | 1..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:09 Download gff for
MXO04038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5773410..5773495 | 1..90 | 95 | | Minus |
| arm_X | 5772528..5773355 | 91..920 | 99 | <- | Minus |
