MXO04039.5prime Sequence
930 bp (733 high quality bases) assembled on 2007-07-18
> MXO04039.5prime
CAGTCGACATGTCTGCTAGCTCCTCCAGCAACGCTTGCAAGCTCTTGCTG
CTCGGCCGCTGCCTGCGCGCCGTGCTCCTCAGCGTGGCCATCCAATTCCT
GCTGCTCACAGTGTTCCTGCTGTTTGTGAACTTCCAACTGTTGCATCCGC
TCGCCTGGGTGACGGGAACACTGCGTCTGGTAGCCAGTTGGTACACCTGG
TTTGCCAGCATCCCTCTGGTGGCCTCCGTCGTGCTCTACGGTGTGATTCT
TTGCCAGCAGCACTTGTCGGAGCGACGCTACTGCCCAACCCGCTACCGGT
GGCTCCTGCACTACGGTCCACGCAAGGTGCTCTTTCTGTTCGCCCACCTT
CTGGTCGGTCTGCTGACCGCCTGGCTCTACACGGGCTATCTGCACACAGA
CTATCAACACCTGAAATATAAGTGCTATGGCCAGGATTGCATTAGTGCTT
ACAATGTCTATCTATTAGGCATCGGTATGACCGCCGGCTGCTACTACTTT
GTCTCCGTTCACATGCGCAAGGAGATCTCCATTGAATTTCCCATTGTGGA
GCAATCGCGGGCGGAGAAAGATGCNGAGAGCTGCTCTACGCCAGTTTTGG
CCAAATCTCTATTAAGTTCGCTGCTGCCTACGATCAGTTACACCGCCGTA
TTTTGTCTTTTCGGACCCATGGTATGCCACAGACTTAGTCACATTCTCTC
TGTGGACATGGACGAGCGACTGGATGGATTCTTCGGAGTTGTTACCAATG
TGCGCCTGCTTTTTTACGGCTATTTGCTGACCGCACAGATTTTGAGCAAC
ATGCACCTAATGCGTTGCTTTTACGGCATTCTGCTCTCGGAGGATTTGCC
ACTGGTGGTGACTAAACCGCGAGCTGCTTTTGCCCATGACCAGGATATAA
CCTTGGTAGCGGGTCTCCGAATTTTTCATG
MXO04039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5857-PA | 1737 | CG5857-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG5857-PA | 1737 | CG5857-RA | 585..906 | 596..917 | 1585 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 144..1059 | 7..925 | 4475 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925002..23925517 | 407..925 | 2400 | 98.8 | Plus |
| 3R | 32079331 | 3R | 23924542..23924941 | 7..406 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:35 has no hits.
MXO04039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:12 Download gff for
MXO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-PA | 1..919 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:22 Download gff for
MXO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 139..1064 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:43 Download gff for
MXO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 139..1064 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:43 Download gff for
MXO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23924537..23924941 | 1..406 | 99 | -> | Plus |
| 3R | 23925002..23925522 | 407..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:22 Download gff for
MXO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19750259..19750663 | 1..406 | 99 | -> | Plus |
| arm_3R | 19750724..19751244 | 407..930 | 98 | | Plus |
