MXO04040.5prime Sequence
724 bp (723 high quality bases) assembled on 2007-07-18
> MXO04040.5prime
CAGTCGACATGATGGATAACAATGTAGAGCAATTAGCAGGAAAGAGCCAA
ACTGAAACAGCCGAGTCCACAGCAGCAGCAACAGGAACAGCAGGAGCAGG
TGTAGCAGTAGTAACCGTGGCAAGTGGAGCCGGACCAACGCCCGGCGCAA
ACTCCTCGACCTTTTGGAAAAACAGCGGACGTCGAGTGCCCGGACGACCC
AGTCCCAAGCGGGAGCTCGAGAAGGCGGCGGCAGTTGGGGTAGCGGTCGG
TCGCGGCGCTGCCCCCGGATCTGGCATGGTGTCCACCTTCACCGAGTACC
AGAAGTCGGTGAGCGATGCCTGGGACATGGGTGACGACGAGTTCTGCATC
ATCAGCAGCACGGAGGCGGCTGCCGCGGCCGTTGGAGCTGGCGATGCGGC
TCATTTCTCCCGGCAAGTGTCGCAGACGGTGGCTCTCAACGTGATCGAGA
CGCACTCTCGAAGCAACCAGAACCATAATGCATCCCGGTCAGCAAACGAA
AGTGGCGCAGATTTGGTCCCAGTCAGCAGTAGCTCGACGGACGACTGCAA
GGAAGACCGTAGATCTCTGCCGGACAGTAATGAAAACAGATCTAGATTGA
GGAACTACCCGGGCAGACCGCAATTGCAGAAGATCAGCTCGAATTGCCAG
GACAGCGAGTACGAGACGAAAATTGAAAAATTCCAAGTGGTGCTAGACTC
GCCTCAACTGGACTTGGTGGCCCT
MXO04040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5745-PA | 1641 | CG5745-RA | 1..716 | 9..724 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5745-RA | 1816 | CG5745-RA | 79..794 | 9..724 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21102277..21102661 | 9..393 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 21102722..21102918 | 393..589 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 21103419..21103556 | 587..724 | 690 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6884 | 35..176 | 209 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2391 | 54..139 | 178 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6834 | 35..149 | 172 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2912 | 50..178 | 166 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6966 | 28..185 | 163 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6787 | 50..123 | 154 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1151 | 48..139 | 154 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6864 | 35..137 | 153 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2424 | 10..139 | 152 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 56..117 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6896 | 50..139 | 137 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1143 | 49..122 | 136 | 64.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3335 | 37..111 | 119 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2899 | 35..149 | 116 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7142..7200 | 41..98 | 112 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1152 | 35..98 | 112 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1586 | 51..99 | 110 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2489 | 40..150 | 107 | 56.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1149 | 49..107 | 107 | 69.5 | Plus |
MXO04040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:17 Download gff for
MXO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-PA | 1..716 | 9..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:09 Download gff for
MXO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-RA | 76..794 | 5..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:54 Download gff for
MXO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-RA | 76..794 | 5..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:54 Download gff for
MXO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21102723..21102918 | 394..589 | 100 | -> | Plus |
| 3R | 21103422..21103556 | 590..724 | 100 | | Plus |
| 3R | 21102274..21102661 | 5..393 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:09 Download gff for
MXO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16927996..16928383 | 5..393 | 99 | -> | Plus |
| arm_3R | 16928445..16928640 | 394..589 | 100 | -> | Plus |
| arm_3R | 16929144..16929278 | 590..724 | 100 | | Plus |
