MXO04041.5prime Sequence
889 bp (567 high quality bases) assembled on 2007-07-18
> MXO04041.5prime
CAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCACAAAACAGC
GTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAAGACGATGT
GGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGAACCTCCAA
CCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGGACACCACC
GAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAACAAGGAAGC
GCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGAAGGCGCTT
TTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAACTAATGATA
TCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCCCAAGACCT
CTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGCAAACGTTC
CCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGACGGAAGAA
CGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGACCCAAGGC
GCAGTCGTCGTGCTTCAATTTGCGGCGACACAGAGCACTCCCTACGCGAC
TGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCAAAAAGAT
GACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGGTTCGGTC
ACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCATGGGCTAC
AGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGCTGGGCTA
TCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGCATAGCTC
TGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACG
MXO04041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-PA | 1662 | CG4622-RA | 1..562 | 9..570 | 2810 | 100 | Plus |
| CG4622-PB | 1482 | CG4622-RB | 1..562 | 9..570 | 2810 | 100 | Plus |
| CG4622-PA | 1662 | CG4622-RA | 561..880 | 570..889 | 1600 | 100 | Plus |
| CG4622-PB | 1482 | CG4622-RB | 561..880 | 570..889 | 1600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 2762 | CG4622-RC | 974..1853 | 9..889 | 4380 | 99.9 | Plus |
| CG4622-RA | 1892 | CG4622-RA | 104..983 | 9..889 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24534414..24535092 | 865..186 | 3335 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24535141..24535324 | 192..9 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:40 has no hits.
MXO04041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:22 Download gff for
MXO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-PB | 1..880 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:48 Download gff for
MXO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..983 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:44 Download gff for
MXO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..983 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:44 Download gff for
MXO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24534339..24534363 | 865..889 | 100 | <- | Minus |
| 2R | 24534415..24535086 | 192..864 | 99 | <- | Minus |
| 2R | 24535142..24535329 | 1..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:48 Download gff for
MXO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20421862..20421886 | 865..889 | 100 | <- | Minus |
| arm_2R | 20421938..20422609 | 192..864 | 99 | <- | Minus |
| arm_2R | 20422665..20422852 | 1..191 | 97 | | Minus |
