MXO04042.5prime Sequence
850 bp (593 high quality bases) assembled on 2007-07-18
> MXO04042.5prime
CAGTCGACATGAGCGGCAATACACACGGACTCAGCTGGTTTCCACATTTT
CCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATACGAAGTGCG
CCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATATATCCGTGA
ACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCGTGGCCGCC
TCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCGGATGGCAA
AGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTGGGAGTACA
CACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACGAGCTGGAT
GCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGACACCTGCAT
CACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGCCAACTTCT
TCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAAATCATCGC
ACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTCGATCTGAG
GCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGTGCAGGGGA
CTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGGACTCGGT
GATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGGCAGATTC
AGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAGGACAAGC
CTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCTACGACAT
CCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTAAAACGAC
MXO04042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7074-PA | 2604 | mio-RA | 1..590 | 9..598 | 2950 | 100 | Plus |
| CG7074-PA | 2604 | mio-RA | 588..841 | 597..850 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2956 | CG7074-RA | 138..978 | 9..850 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2218174..2218470 | 553..850 | 1440 | 99.7 | Plus |
| 2L | 23513712 | 2L | 2217830..2218081 | 301..552 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 2217598..2217771 | 127..300 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 2217427..2217546 | 9..128 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:26 has no hits.
MXO04042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:26 Download gff for
MXO04042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7074-PA | 1..841 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:08 Download gff for
MXO04042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 130..978 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:34 Download gff for
MXO04042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 130..978 | 1..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:34 Download gff for
MXO04042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2217419..2217544 | 1..126 | 96 | -> | Plus |
| 2L | 2217598..2217771 | 127..300 | 100 | -> | Plus |
| 2L | 2217830..2218081 | 301..552 | 100 | -> | Plus |
| 2L | 2218174..2218470 | 553..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:08 Download gff for
MXO04042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2217419..2217544 | 1..126 | 96 | -> | Plus |
| arm_2L | 2217598..2217771 | 127..300 | 100 | -> | Plus |
| arm_2L | 2217830..2218081 | 301..552 | 100 | -> | Plus |
| arm_2L | 2218174..2218470 | 553..850 | 99 | | Plus |
