MXO04044.5prime Sequence
887 bp (775 high quality bases) assembled on 2007-07-18
> MXO04044.5prime
CAGTCGACATGTTTTCAATGGACTCTTTTGCCATGGACAAGGATGCGAAG
TTGTACGAAGGAAATGCTCTATTCCGAAACCAGCCGTCGTACAAGGTGTT
CAATAAATCCTTCGAGCACGTGGACGATGCGCTGTACACATTGCTGAACG
AAGTGGAGCCAGATGTACTGCGAATGGAGCTCCAGGAAACGGGCGATCTC
TTTAAGTCGTTCAATCGCAACTCGGCCTTGAGGGATCCGCGCAACAACGA
GGTGCCACCGAAACCGACTCGCGACCTCACCACCGCCAGTTCACTCTACA
GCTTTCCCAATCCCCTGGAGCAATACTCGGAGCTGAATCTTAAGCAACAG
GCCGCCTGCATGCGAGTGCTCCTCGCCTGGCAATGCAGTCAACCCGTCGA
TGAGCAGGACATCGTGGTGTGGCAGGCAACGGAAAAGAAGCGATACAACG
AGCAGCAGCGTGTGCAGAAATACATACACGACCACGAGCAAGGACGCAAG
GAAGTCATCTACGCGCCCATGAAGAGCCTGGTGGCGGTCTACAGAAAGTG
GTACGAACTGGGTGTTAAGAAACTTCAACAAACCTACCCCAATGACTCAT
ATATGACCTTCTCCGGGCTGCCACAGCTGCCCCAGTGCAGGAGTCTCAAT
GCTCAGACCGCCAGCATAGAGCAGGTGGAGCTGGAGCGGATTGTCGGTCG
GGTAAGACTCTTGCCAGAGGTGGAAGTTCGCCATGAAGCCCTGCGGACAT
TACGACTGCGCTTGGATCGCTATGCGACGAGAGAAACAAGGGCTCCTGTG
CAGCTATTGCGGGAGGAAGACAAGGAACTGGAACTCGAAGCTGGCAACGT
CTTCGTGCTGCCCCTAGACTCGCTGTTAATGCTCTTT
MXO04044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10825-PA | 2055 | CG10825-RA | 1..876 | 9..884 | 4380 | 100 | Plus |
| CG10825-PB | 1890 | CG10825-RB | 1..711 | 174..884 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RA | 2505 | CG10825-RA | 229..1104 | 9..884 | 4380 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 183..691 | 42..550 | 2545 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 691..949 | 626..884 | 1295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21130444..21131319 | 9..884 | 4380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 753..814 | 480..418 | 123 | 70.3 | Minus |
MXO04044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:36 Download gff for
MXO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-PA | 1..879 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:24 Download gff for
MXO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 184..1069 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:54 Download gff for
MXO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 222..1107 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:54 Download gff for
MXO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21130437..21131322 | 1..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:24 Download gff for
MXO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16956159..16957044 | 1..887 | 99 | | Plus |
