MXO04046.5prime Sequence
830 bp (781 high quality bases) assembled on 2007-07-18
> MXO04046.5prime
CAGTCGACATGACGGGAACAGCGGCAGTGCGACTCAGCATTACGATACCC
ACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAGGTGGTCAA
TGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTCAACCATTG
AAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGCAGAGCCAC
AAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGCCACGATCA
GCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGTGCGCCAGA
TCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCAGTCTAGAG
GGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAACGCTACGA
GAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCGTGAGGGAT
CTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACGTTCAGCGT
GAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAACACATCAA
TGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGTGCGATCCC
GATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATGCGGCTATT
ACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTGGCGAGCTT
TGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCATGCTCATTT
CCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTGTGATCCAG
GATCGATCGCTCCGCANGCTGGGCATGCTG
MXO04046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-PA | 1818 | CG7384-RA | 1..822 | 9..830 | 4091 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 2261 | CG7384-RA | 216..1037 | 9..830 | 4099 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10509706..10510238 | 541..9 | 2665 | 100 | Minus |
| 2L | 23513712 | 2L | 10509500..10509643 | 685..542 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 10509140..10509284 | 830..686 | 714 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:52 has no hits.
MXO04046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:45 Download gff for
MXO04046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-PA | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:54 Download gff for
MXO04046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 209..1037 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:40 Download gff for
MXO04046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 209..1037 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:40 Download gff for
MXO04046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10509140..10509284 | 686..830 | 99 | <- | Minus |
| 2L | 10509500..10509643 | 542..685 | 100 | <- | Minus |
| 2L | 10509706..10510243 | 1..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:54 Download gff for
MXO04046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10509140..10509284 | 686..830 | 99 | <- | Minus |
| arm_2L | 10509500..10509643 | 542..685 | 100 | <- | Minus |
| arm_2L | 10509706..10510243 | 1..541 | 99 | | Minus |
