MXO04047.5prime Sequence
931 bp (593 high quality bases) assembled on 2007-07-18
> MXO04047.5prime
CAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCCCCAGACGA
GGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCACCCACATC
TAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTACCGTCTTCC
TGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGGATCACATA
TGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTACATTAACAG
AACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCTCATTGGCC
TCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTGAGAAGCCA
GGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATATTTCTGCAC
CACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGTCTACGATT
TGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATCTTATTTTC
GATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGACCCCATTCT
GTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGTATCGAAGT
CCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCTGGCTCTTC
CTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTCGTGGGTCT
GTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACTGTGGCTCA
TCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGCAGTTGGCC
TGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTACATCCTGTT
CTTCTACATTCACCTGAGTGTCCTAAACGGCAGCGGGCACGGAGATGGGT
TCTATAGTTCGGCCTTTCAGTCCAGGCTGAT
MXO04047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12311-PA | 2298 | Pomt2-RA | 1..923 | 9..931 | 4515 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tw-RA | 2671 | CG12311-RA | 160..1082 | 9..931 | 4555 | 99.6 | Plus |
| tw-RB | 2840 | CG12311-RB | 160..1082 | 9..931 | 4555 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 785716..786146 | 501..931 | 2095 | 99.1 | Plus |
| X | 23542271 | X | 784905..785015 | 9..119 | 555 | 100 | Plus |
| X | 23542271 | X | 785547..785655 | 393..501 | 545 | 100 | Plus |
| X | 23542271 | X | 785386..785492 | 286..392 | 535 | 100 | Plus |
| X | 23542271 | X | 785233..785318 | 202..287 | 430 | 100 | Plus |
| X | 23542271 | X | 785089..785173 | 118..202 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:39 has no hits.
MXO04047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:50 Download gff for
MXO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12311-PA | 1..923 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:48 Download gff for
MXO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tw-RB | 160..1082 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:04 Download gff for
MXO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tw-RB | 160..1082 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:04 Download gff for
MXO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 784905..785014 | 9..118 | 100 | -> | Plus |
| X | 785090..785173 | 119..202 | 100 | -> | Plus |
| X | 785234..785318 | 203..287 | 100 | -> | Plus |
| X | 785388..785492 | 288..392 | 100 | -> | Plus |
| X | 785547..785655 | 393..501 | 100 | -> | Plus |
| X | 785717..786146 | 502..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:48 Download gff for
MXO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 678938..679047 | 9..118 | 100 | -> | Plus |
| arm_X | 679123..679206 | 119..202 | 100 | -> | Plus |
| arm_X | 679267..679351 | 203..287 | 100 | -> | Plus |
| arm_X | 679421..679525 | 288..392 | 100 | -> | Plus |
| arm_X | 679580..679688 | 393..501 | 100 | -> | Plus |
| arm_X | 679750..680179 | 502..931 | 99 | | Plus |
