MXO04048.5prime Sequence
924 bp (791 high quality bases) assembled on 2007-07-18
> MXO04048.5prime
CAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTCCGGCCGTC
AAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAGCAGTCGCC
GGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCGCCAAGTGC
AGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCATATCCGCC
GGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAGCAGCCCGA
ATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAATGCGCAGGA
AGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGGCCAAGCGG
AAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTTCTGGTGAC
GATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACATCAACTACA
CGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCGGCTGGGAT
TCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCCTTTGCTCT
ATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGTCAATGGCT
ACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGACGCCCAAT
AACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGAGAGGGCAC
CATATTTGGCTTTAATGAGTCCTACATTTTCGATCCACATATCGACGAGG
TGTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGGAGAATTAC
CTCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTTGTCTCCGCACA
GTTGACGTTCAAGATAAAGACGGGTAATTTCCAGGCAAATGGTGGACCTC
TTTCTGCTCCTGATTGTTTTCGGT
MXO04048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8743-PA | 1959 | CG8743-RA | 1..916 | 9..924 | 4530 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..1176 | 4..924 | 4560 | 99.7 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..1176 | 4..924 | 4560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716452..19717000 | 924..376 | 2715 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19747868..19748416 | 924..376 | 2715 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 377..4 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 377..4 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:51 has no hits.
MXO04048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:07:55 Download gff for
MXO04048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1..916 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:58 Download gff for
MXO04048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..1176 | 1..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:41 Download gff for
MXO04048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..1176 | 1..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:41 Download gff for
MXO04048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19716452..19716998 | 378..924 | 99 | <- | Minus |
| 3L | 19717700..19718075 | 1..377 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:58 Download gff for
MXO04048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19709552..19710098 | 378..924 | 99 | <- | Minus |
| arm_3L | 19710800..19711175 | 1..377 | 99 | | Minus |
