MXO04051.5prime Sequence
925 bp (567 high quality bases) assembled on 2007-07-18
> MXO04051.5prime
CAGTCGACATGAGCGACGAAGGTGGCTGTAAATCGGAGCAGTTAGAGAAA
TCCGAAGAAGCGGAGGAAAAAAAGGGGGACGCAGAAGGACAGGAAGCGAA
AGCTCCAATTCTCAACCCCATTTCAGTCCCAGAAGTTGATGACAAGCCGA
CGGAAAATAAACCCCAATCGGATAATCACGCGGACAAAACGGACGAAACT
CCATCTCAGGACTTTGCCGCCTACGAGGAGCACATGACCTATGGAGCGGA
CGGCGGGGCTATATACACGGATCCCAGCACGAAGCAGAAATACAAGTGGT
GCGCCACCGGAAACAATTGGCAACCCTTAGGCGTTGATGAAGATGTTGAT
GGACAGGCTGAAGATCCCTACGAAAACGAGCACTACAAGTGGTGTCCCAA
ATCCCAACAGTGGTTGCCAAAAAAACAGGAAACTGAAACGGAGCACTACA
AGTGGGATGACGAGCAAAAGAAGTGGGTGCCCAAGCACCCGAACCCTGGC
CAGGAAGGGGTTTGCGGTGTGGATGAGCATGGCGAGCGCACTTACACCGA
CAAGGATGGCGTCGAGTTCTTTTTGGGATGCAACCAAGAGTGCTTGGTTC
CCCAAAGATCGATGATGATTTCATGGCTCGCTACCAAATGAACTATGGAT
TTATTGACAACACATCAGCGGGGGAGAAAGAGAAGGCTGAAAAGGAGGCG
GCTGAGGCCAAGAGAAAGGAGGAGGAACTCAAGCGTATGACGGCAGAGGC
GGAAGCTGCTATGTCTAGAGACAATCCAGCATCCAGCGCTGCAGTGCCCA
CTGGCAAGCGAAAGGCCCAGGAGCCCCCAAAATGGTTCGAAATGGATCCA
TTGCAGAACACCAAGGTGTATGTCTCCAATTTGCCCCTGGACATTACTAT
GGGATGAGTTTGCCGATCTGATGGG
MXO04051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6049-PB | 1671 | CG6049-RB | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG6049-PC | 1671 | CG6049-RC | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG6049-PA | 1671 | CG6049-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG6049-PB | 1671 | CG6049-RB | 595..892 | 605..902 | 1490 | 100 | Plus |
| CG6049-PC | 1671 | CG6049-RC | 595..892 | 605..902 | 1490 | 100 | Plus |
| CG6049-PA | 1671 | CG6049-RA | 595..892 | 605..902 | 1490 | 100 | Plus |
| CG6049-PB | 1671 | CG6049-RB | 562..596 | 571..605 | 175 | 100 | Plus |
| CG6049-PC | 1671 | CG6049-RC | 562..596 | 571..605 | 175 | 100 | Plus |
| CG6049-PA | 1671 | CG6049-RA | 562..596 | 571..605 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1217 | 9..925 | 4510 | 99.7 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1202 | 9..925 | 4510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 830..9 | 4010 | 99.8 | Minus |
| 3L | 28110227 | 3L | 21424563..21424656 | 925..831 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:39 has no hits.
MXO04051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:04 Download gff for
MXO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PB | 1..914 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:30 Download gff for
MXO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 283..1202 | 1..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:00 Download gff for
MXO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 283..1202 | 1..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:00 Download gff for
MXO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21424563..21424656 | 831..925 | 98 | <- | Minus |
| 3L | 21424718..21425543 | 1..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:30 Download gff for
MXO04051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21417663..21417756 | 831..925 | 98 | <- | Minus |
| arm_3L | 21417818..21418643 | 1..830 | 99 | | Minus |
