MXO04052.5prime Sequence
844 bp (775 high quality bases) assembled on 2007-07-18
> MXO04052.5prime
CAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTTCACTGGAT
GTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGCCTGAACTT
TCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTACTGCCAACC
TTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGCACAAAACC
CCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATGGTGCTGTC
ACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGATTTTGACG
AGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGCCCAGCTAT
TTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACCACCTACGA
CTCCAAGATTCGGCAGGACATAAACAAGTCACGTGAGGTTTCCCCGATTC
GTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCAACCACTTTCTAGCG
ACACCAACTCTGCACAGCATGCCTTCTCCGGCCACCAAGTGCAAACCCAT
CNGAGCCTAACAACAACANGCAACGAACAGTAGCGGGAATTTTAGNTTCG
GGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGCAACGGGTGGA
GCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCCAAAA
AGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGAAAGGGGGCAG
GTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGAAATCAAGCAG
CTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAAATGCA
MXO04052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8390-PD | 1905 | vlc-RD | 87..630 | 8..551 | 2720 | 100 | Plus |
| CG8390-PA | 1818 | vlc-RA | 1..543 | 9..551 | 2715 | 100 | Plus |
| CG8390-PC | 1818 | vlc-RC | 1..543 | 9..551 | 2715 | 100 | Plus |
| CG8390-PB | 1752 | vlc-RB | 1..424 | 9..432 | 2120 | 100 | Plus |
| CG8390-PD | 1905 | vlc-RD | 672..868 | 597..793 | 985 | 100 | Plus |
| CG8390-PA | 1818 | vlc-RA | 585..781 | 597..793 | 985 | 100 | Plus |
| CG8390-PC | 1818 | vlc-RC | 585..781 | 597..793 | 985 | 100 | Plus |
| CG8390-PB | 1752 | vlc-RB | 519..715 | 597..793 | 985 | 100 | Plus |
| CG8390-PB | 1752 | vlc-RB | 425..477 | 499..551 | 265 | 100 | Plus |
| CG8390-PD | 1905 | vlc-RD | 869..920 | 793..844 | 260 | 100 | Plus |
| CG8390-PA | 1818 | vlc-RA | 782..833 | 793..844 | 260 | 100 | Plus |
| CG8390-PC | 1818 | vlc-RC | 782..833 | 793..844 | 260 | 100 | Plus |
| CG8390-PB | 1752 | vlc-RB | 716..767 | 793..844 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 2425 | CG8390-RI | 87..920 | 8..844 | 4065 | 99.4 | Plus |
| vlc-RH | 2369 | CG8390-RH | 31..864 | 8..844 | 4065 | 99.4 | Plus |
| vlc-RG | 2487 | CG8390-RG | 149..982 | 8..844 | 4065 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703048..5703813 | 76..844 | 3600 | 99.4 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:50 has no hits.
MXO04052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:09 Download gff for
MXO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8390-PD | 80..919 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:41 Download gff for
MXO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 142..981 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:16 Download gff for
MXO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 142..981 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:16 Download gff for
MXO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5702870..5702947 | 1..78 | 96 | -> | Plus |
| 2R | 5703051..5703812 | 79..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:41 Download gff for
MXO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590375..1590452 | 1..78 | 96 | -> | Plus |
| arm_2R | 1590556..1591317 | 79..843 | 99 | | Plus |
